Non-Coding RNA Search

Pig2-41P21

Sequence:


               
               ATATTTGAGTGGGCTAAATGTTTTTAATGTTAATTAAGTGTGTGGTATGTGGATGTTTGA
AGGTGTGGGTAATGTCCACCCCATGAGGGGTGTCACTCATGATTGTGGGCAAGCTCCAGG
TGGTGGGTCCTTGCCCACAAGACCCTGACGAGGCAGAGCTGCTGGGCTTCGGGGGACATG
GCTTTACTGCACAGCCCTGCCCAAGGGCCCAAGACCCGCACACCAGCAGCCAGATGTACT
TTTGAATGTACTTGTCAGTTCGGCCTCTTAACACTTTCCTGTCATCATAATGTTCATTTT
TGTATTTTTTAAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTTGAGTGGGCTAAATGTTTTTAATGTTAATTAAGTGTGTGGTATGTGGATGTTTGA
AGGTGTGGGTAATGTCCACCCCATGAGGGGTGTCACTCATGATTGTGGGCAAGCTCCAGG
TGGTGGGTCCTTGCCCACAAGACCCTGACGAGGCAGAGCTGCTGGGCTTCGGGGGACATG
GCTTTACTGCACAGCCCTGCCCAAGGGCCCAAGACCCGCACACCAGCAGCCAGATGTACT
TTTGAATGTACTTGTCAGTTCGGCCTCTTAACACTTTCCTGTCATCATAATGTTCATTTT
TGTATTTTTTAAAACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               39-232, + strand, RNAz p=0.992254

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-232, + strand, RNAz p=0.992254

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK022740, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK022740, +

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-317, gnl|bosTau2|chr17 (25989202-25989519)
               

               
               1-317, gnl|canFam2|chr26 (7864212-7863905)
               

               
               1-317, gnl|hg17|chr12 (124152295-124152583)
               

               
               1-317, gnl|Hg17|chr12 (124152316-124152633)
               

               
               1-317, gnl|loxAfr1|scaffold_75703 (1283-947)
               

               
               1-317, gnl|mm7|chr5 (124756456-124756743)
               

               
               1-317, gnl|oryCun1|scaffold_169118 (6647-6392)
               

               
               1-317, gnl|panTro1|chr10 (127245344-127245634)
               

               
               1-317, gnl|rheMac2|chr11 (126459121-126459412)
               

               
               1-317, gnl|rn3|chr12 (32070722-32070429)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-317, gnl|bosTau2|chr17 (25989202-25989519)
               

               
               1-317, gnl|canFam2|chr26 (7864212-7863905)
               

               
               1-317, gnl|hg17|chr12 (124152295-124152583)
               

               
               1-317, gnl|Hg17|chr12 (124152316-124152633)
               

               
               1-317, gnl|loxAfr1|scaffold_75703 (1283-947)
               

               
               1-317, gnl|mm7|chr5 (124756456-124756743)
               

               
               1-317, gnl|oryCun1|scaffold_169118 (6647-6392)
               

               
               1-317, gnl|panTro1|chr10 (127245344-127245634)
               

               
               1-317, gnl|rheMac2|chr11 (126459121-126459412)
               

               
               1-317, gnl|rn3|chr12 (32070722-32070429)

	1-317, gnl\|bosTau2\|chr17 (25989202-25989519)
	1-317, gnl\|canFam2\|chr26 (7864212-7863905)
	1-317, gnl\|hg17\|chr12 (124152295-124152583)
	1-317, gnl\|Hg17\|chr12 (124152316-124152633)
	1-317, gnl\|loxAfr1\|scaffold_75703 (1283-947)
	1-317, gnl\|mm7\|chr5 (124756456-124756743)
	1-317, gnl\|oryCun1\|scaffold_169118 (6647-6392)
	1-317, gnl\|panTro1\|chr10 (127245344-127245634)
	1-317, gnl\|rheMac2\|chr11 (126459121-126459412)
	1-317, gnl\|rn3\|chr12 (32070722-32070429)