Non-Coding RNA Search

Pig2-42K02

Sequence:


               
               ATGGCTGCCCCGCCCCCAGGCGGCGCCCCGGTGGAGGAGCTGCGGCACTTGGCCCAGGCC
AACGTCTCCATGGACATCGACACCTTCACCAACCTGAACCCCCGGGTGCTGCAGAGCCTG
AGCGTGGGCAACGTGACGACACTGCTGGGCCAGAACGTGGGGGACCTGCAGAAGGCCCGC
AGCCACCCCACCATTAGCTCCTGGCTCCGCAGCCTCAACCAGTCGGCCCTGGGCGAGCTG
GGCCTGGACAAGCACCCCACCGGCCCCACCAGACCCACCCACTCGACCACCGGGACCCCC
AGCACCACCCTCTGGACTCCCCATCCAGGGCTTACCTCCCACCGGCCTGGGGGCCATGCC
CCCAGCTCAGGCAGCCCACCTGCCCCCCCGGGTCACCTGCCACTTGCTGTGGCCCTGCCC
TCAGGCCTCCTGTGGCTGCTGTATAGGGGCACACCGTGGCCCAGCTGGGACTGCTCACAT
GGCCTCCAAGGACAGCGCTGCCCCAGCACCACAAGCAGTAAAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCTGCCCCGCCCCCAGGCGGCGCCCCGGTGGAGGAGCTGCGGCACTTGGCCCAGGCC
AACGTCTCCATGGACATCGACACCTTCACCAACCTGAACCCCCGGGTGCTGCAGAGCCTG
AGCGTGGGCAACGTGACGACACTGCTGGGCCAGAACGTGGGGGACCTGCAGAAGGCCCGC
AGCCACCCCACCATTAGCTCCTGGCTCCGCAGCCTCAACCAGTCGGCCCTGGGCGAGCTG
GGCCTGGACAAGCACCCCACCGGCCCCACCAGACCCACCCACTCGACCACCGGGACCCCC
AGCACCACCCTCTGGACTCCCCATCCAGGGCTTACCTCCCACCGGCCTGGGGGCCATGCC
CCCAGCTCAGGCAGCCCACCTGCCCCCCCGGGTCACCTGCCACTTGCTGTGGCCCTGCCC
TCAGGCCTCCTGTGGCTGCTGTATAGGGGCACACCGTGGCCCAGCTGGGACTGCTCACAT
GGCCTCCAAGGACAGCGCTGCCCCAGCACCACAAGCAGTAAAGCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               190-389, - strand, RNAz p=0.809438

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-389, - strand, RNAz p=0.809438

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               131-288, - strand, RNAmicro p=0.979067

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               131-288, - strand, RNAmicro p=0.979067

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-389, gnl|bosTau2|chr25 (1147283-1147563)
               

               
               111-389, gnl|Hg17|chr16 (760295-760008)
               

               
               111-389, gnl|Mm7|chr17 (23930010-23930301)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-389, gnl|bosTau2|chr25 (1147283-1147563)
               

               
               111-389, gnl|Hg17|chr16 (760295-760008)
               

               
               111-389, gnl|Mm7|chr17 (23930010-23930301)

	111-389, gnl\|bosTau2\|chr25 (1147283-1147563)
	111-389, gnl\|Hg17\|chr16 (760295-760008)
	111-389, gnl\|Mm7\|chr17 (23930010-23930301)