Non-Coding RNA Search

Pig2-42L02

Sequence:


               
               TTTTTTTTTTTTTTTACTTTTTTTCTAAAAAATGTTTTCCCCTTTAAAAAAAAATTGCAT
TGCCCCCCAAAAAAATGTTTTCAAATATTTCTTGTCCAACAAAAGGCCCTGTTTTTCCCA
TAAATCCACTGTTTCTGCTTGGCAAAACCTGAAACGTGCAATTCCTTCCAATCCTTTTAA
AACCACCTTGGTCATTCATCCTTTGAACCATGGGGTTTGCCCTTTTCAGCCCAATGATTC
TGGTTTTCTTAAATTCCATACATTACAGGACCTGCTTAAAATTTTTTTTTCAAAGTGAAA
AAGGTCAAAGGGGAAGGCAGGGTGGATAAAGGCCCTGCTGGATCCCAGGCATTACCTGGT
CCACCAGGTGGCCCAAAAAGTACCCCCTCCCTGGCTCCCCTTGACCCACTCCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTACTTTTTTTCTAAAAAATGTTTTCCCCTTTAAAAAAAAATTGCAT
TGCCCCCCAAAAAAATGTTTTCAAATATTTCTTGTCCAACAAAAGGCCCTGTTTTTCCCA
TAAATCCACTGTTTCTGCTTGGCAAAACCTGAAACGTGCAATTCCTTCCAATCCTTTTAA
AACCACCTTGGTCATTCATCCTTTGAACCATGGGGTTTGCCCTTTTCAGCCCAATGATTC
TGGTTTTCTTAAATTCCATACATTACAGGACCTGCTTAAAATTTTTTTTTCAAAGTGAAA
AAGGTCAAAGGGGAAGGCAGGGTGGATAAAGGCCCTGCTGGATCCCAGGCATTACCTGGT
CCACCAGGTGGCCCAAAAAGTACCCCCTCCCTGGCTCCCCTTGACCCACTCCTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               287-416, - strand, RNAz p=0.999987

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               287-416, - strand, RNAz p=0.999987

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006390, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006390, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-416, gnl|bosTau2|chr5 (48526401-48526801)
               

               
               13-416, gnl|Hg17|chr12 (30674611-30675008)
               

               
               13-416, gnl|Mm7|chr6 (148850638-148850997)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-416, gnl|bosTau2|chr5 (48526401-48526801)
               

               
               13-416, gnl|Hg17|chr12 (30674611-30675008)
               

               
               13-416, gnl|Mm7|chr6 (148850638-148850997)

	13-416, gnl\|bosTau2\|chr5 (48526401-48526801)
	13-416, gnl\|Hg17\|chr12 (30674611-30675008)
	13-416, gnl\|Mm7\|chr6 (148850638-148850997)