Non-Coding RNA Search

Pig2-42L09

Sequence:


               
               CAGCGCTTTGCTCGGGCAGCTGCCGACTTCGCCACCCACGGCAAGCTCGGGAAGCTGGAG
TTTGCCCAGGACGCCCATGGGCGGCCTGACGTTTCTGCCTTTGACTTCACAAGCATGATG
CGGGCAGAGAGCTCTGCTCGGGTGCGGGAGAAGCACGGCGCCCGCCTGCTGCTGGGGCTG
GTCGGGGACTGCCTGGTGGAGCCCTTCTGGCCCCTGGGCACTGGAGTGGCCCGGGGCTTC
TTGGCAGCCTTTGATGCCGCCTGGATGGTGAAGCGGTGGGCAGAGGGCACCGGGCCCCTG
GAGGTGTTGGCAGATCGAGAGAGCCTGTACCAGCTCCTGTCCCAGACATCCCCGGAGAAC
ATGCACCGCAATGTGGCCCAATATGGACTGGACCCGGCCACCCGCTATCCCAACCTGAAC
CTTCGGGCTGTGACCCCCACTCAGGTACGAGACCTGTATGATGTGGAGGCCAAGGAGCCT
GTGCGGAAGATAAGTGACAAAATGGACTCAGGAAAGCCAGCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCTTTGCTCGGGCAGCTGCCGACTTCGCCACCCACGGCAAGCTCGGGAAGCTGGAG
TTTGCCCAGGACGCCCATGGGCGGCCTGACGTTTCTGCCTTTGACTTCACAAGCATGATG
CGGGCAGAGAGCTCTGCTCGGGTGCGGGAGAAGCACGGCGCCCGCCTGCTGCTGGGGCTG
GTCGGGGACTGCCTGGTGGAGCCCTTCTGGCCCCTGGGCACTGGAGTGGCCCGGGGCTTC
TTGGCAGCCTTTGATGCCGCCTGGATGGTGAAGCGGTGGGCAGAGGGCACCGGGCCCCTG
GAGGTGTTGGCAGATCGAGAGAGCCTGTACCAGCTCCTGTCCCAGACATCCCCGGAGAAC
ATGCACCGCAATGTGGCCCAATATGGACTGGACCCGGCCACCCGCTATCCCAACCTGAAC
CTTCGGGCTGTGACCCCCACTCAGGTACGAGACCTGTATGATGTGGAGGCCAAGGAGCCT
GTGCGGAAGATAAGTGACAAAATGGACTCAGGAAAGCCAGCCACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.980838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.980838

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-201, gnl|bosTau2|chr9 (23080753-23080553)
               

               
               1-201, gnl|Hg17|chr6 (109878396-109878196)
               

               
               1-201, gnl|Mm7|chr10 (41291852-41292052)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-201, gnl|bosTau2|chr9 (23080753-23080553)
               

               
               1-201, gnl|Hg17|chr6 (109878396-109878196)
               

               
               1-201, gnl|Mm7|chr10 (41291852-41292052)

	1-201, gnl\|bosTau2\|chr9 (23080753-23080553)
	1-201, gnl\|Hg17\|chr6 (109878396-109878196)
	1-201, gnl\|Mm7\|chr10 (41291852-41292052)