Non-Coding RNA Search

Pig2-42N13

Sequence:


               
               ATTAAAGGAAAAAGTCAGTTTATATGGAAGAGAATCAGATCAAGAGCAGAATCTCCTCCG
CTTGACCCCCAGTCCCCAGGGGTCCCCACTGCTGATGTATCCTGATAATGTCTGTTTGGG
TGCTTTGGCTCCAACAACAGAAATTCCAGCTCCCACTGACTTAGCATTTCAGGGAATTCT
TTGTCTCATGTGATTGAAAGTCCCAAGGGAAGGTGATGGGCACCCGGGATTGGTTCACTC
AGTAGCTCCTGGTACTGGGGATTCTCTCTGTCCTGTACTCCGGAAAGACTCTCACTCACT
CCTCTGTGCCATTATAGTCCTTCCTTTCAACCTGGACCAGTAAGAGTGGCTGGGCTGCTG
TGCTCTGATTGGCTTAAACCAATCATGTTGGACCCTTGGAGCTGGGGGCATGAGGTCATT
TTTCTCTAAGTGGAGAAGTGGGGCTTCTCAAACAACACAGCATTTCTGTTAGGAAGGAGG
AAAGTGGATTTAATGCTGGATGAGCAACTGACAGTGTCAACCACACTACAGAAAATTTCT
ATATAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAGGAAAAAGTCAGTTTATATGGAAGAGAATCAGATCAAGAGCAGAATCTCCTCCG
CTTGACCCCCAGTCCCCAGGGGTCCCCACTGCTGATGTATCCTGATAATGTCTGTTTGGG
TGCTTTGGCTCCAACAACAGAAATTCCAGCTCCCACTGACTTAGCATTTCAGGGAATTCT
TTGTCTCATGTGATTGAAAGTCCCAAGGGAAGGTGATGGGCACCCGGGATTGGTTCACTC
AGTAGCTCCTGGTACTGGGGATTCTCTCTGTCCTGTACTCCGGAAAGACTCTCACTCACT
CCTCTGTGCCATTATAGTCCTTCCTTTCAACCTGGACCAGTAAGAGTGGCTGGGCTGCTG
TGCTCTGATTGGCTTAAACCAATCATGTTGGACCCTTGGAGCTGGGGGCATGAGGTCATT
TTTCTCTAAGTGGAGAAGTGGGGCTTCTCAAACAACACAGCATTTCTGTTAGGAAGGAGG
AAAGTGGATTTAATGCTGGATGAGCAACTGACAGTGTCAACCACACTACAGAAAATTTCT
ATATAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               407-515, + strand, RNAz p=0.891371

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-515, + strand, RNAz p=0.891371

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-247, gnl|bosTau2|chr1 (83746008-83746245)
               

               
               1-247, gnl|Hg17|chr10 (125530815-125530462)
               


               
               290-547, gnl|bosTau2|chr1 (83746259-83746516)
               

               
               290-547, gnl|canFam2|chr28 (36249147-36249477)
               

               
               290-547, gnl|dasNov1|scaffold_58713 (974-1339)
               

               
               290-547, gnl|hg17|chr10 (125530115-125530473)
               

               
               290-547, gnl|Hg17|chr10 (125530435-125530183)
               

               
               290-547, gnl|mm7|chr7 (128476122-128476333)
               

               
               290-547, gnl|oryCun1|scaffold_213379 (53784-53449)
               

               
               290-547, gnl|panTro1|chr8 (127904653-127905008)
               

               
               290-547, gnl|rheMac2|chr9 (123381035-123381382)
               

               
               290-547, gnl|rn3|chr1 (191689428-191689726)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-247, gnl|bosTau2|chr1 (83746008-83746245)
               

               
               1-247, gnl|Hg17|chr10 (125530815-125530462)
               


               
               290-547, gnl|bosTau2|chr1 (83746259-83746516)
               

               
               290-547, gnl|canFam2|chr28 (36249147-36249477)
               

               
               290-547, gnl|dasNov1|scaffold_58713 (974-1339)
               

               
               290-547, gnl|hg17|chr10 (125530115-125530473)
               

               
               290-547, gnl|Hg17|chr10 (125530435-125530183)
               

               
               290-547, gnl|mm7|chr7 (128476122-128476333)
               

               
               290-547, gnl|oryCun1|scaffold_213379 (53784-53449)
               

               
               290-547, gnl|panTro1|chr8 (127904653-127905008)
               

               
               290-547, gnl|rheMac2|chr9 (123381035-123381382)
               

               
               290-547, gnl|rn3|chr1 (191689428-191689726)

	1-247, gnl\|bosTau2\|chr1 (83746008-83746245)
	1-247, gnl\|Hg17\|chr10 (125530815-125530462)

	290-547, gnl\|bosTau2\|chr1 (83746259-83746516)
	290-547, gnl\|canFam2\|chr28 (36249147-36249477)
	290-547, gnl\|dasNov1\|scaffold_58713 (974-1339)
	290-547, gnl\|hg17\|chr10 (125530115-125530473)
	290-547, gnl\|Hg17\|chr10 (125530435-125530183)
	290-547, gnl\|mm7\|chr7 (128476122-128476333)
	290-547, gnl\|oryCun1\|scaffold_213379 (53784-53449)
	290-547, gnl\|panTro1\|chr8 (127904653-127905008)
	290-547, gnl\|rheMac2\|chr9 (123381035-123381382)
	290-547, gnl\|rn3\|chr1 (191689428-191689726)