Non-Coding RNA Search

Pig2-43O11

Sequence:


               
               AAAGCTTCTTCGACTTACTCAAGGGCTACAAAGACGACAAGTCTGACCGAGGTCCCACTC
CGACCAACCTCAGTGACTTTCTCATCGCCGGTGGGGGCAAGGGTTCTGGTTTCTCCTTGG
ATGTCATAGACGGGCCCATCTCCCAGAGAGAGAATCTCAGGCTGTTTAAGGAAAGGGAAA
AACCACTCAAGCGACGTTCCAAGTCTGAAACCGGGGACTCGTCCATTTTTCGAAAGCTAC
GCAATGCCAAAGGTGAAGAACTTGGGAAATCGTCCGACCTTGAAGATAACCGGTCGGAAG
ACTCTGTCAGGCCCTGGACGTGTCCAAAGTGCTTTGCCCACTACGATGTCCAGAGTATAT
TATTTGACTTGAACGAGGCAATTGTGAACAGGCACAATGTAATTAAGAGGAGAAACACAA
CCACGGGGGCTTCAGCAGCTGCTGTGGCATCCTTAGTCTCGGGGCCTTTGTCCCACTCGG
CCAGTTTTAGCTCCCCGATGGGCAGCACAGAGGACCTGAATTCCAAAGGGAGCCTCAGCA
TGGACCAGGGAGACGACAAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCTTCTTCGACTTACTCAAGGGCTACAAAGACGACAAGTCTGACCGAGGTCCCACTC
CGACCAACCTCAGTGACTTTCTCATCGCCGGTGGGGGCAAGGGTTCTGGTTTCTCCTTGG
ATGTCATAGACGGGCCCATCTCCCAGAGAGAGAATCTCAGGCTGTTTAAGGAAAGGGAAA
AACCACTCAAGCGACGTTCCAAGTCTGAAACCGGGGACTCGTCCATTTTTCGAAAGCTAC
GCAATGCCAAAGGTGAAGAACTTGGGAAATCGTCCGACCTTGAAGATAACCGGTCGGAAG
ACTCTGTCAGGCCCTGGACGTGTCCAAAGTGCTTTGCCCACTACGATGTCCAGAGTATAT
TATTTGACTTGAACGAGGCAATTGTGAACAGGCACAATGTAATTAAGAGGAGAAACACAA
CCACGGGGGCTTCAGCAGCTGCTGTGGCATCCTTAGTCTCGGGGCCTTTGTCCCACTCGG
CCAGTTTTAGCTCCCCGATGGGCAGCACAGAGGACCTGAATTCCAAAGGGAGCCTCAGCA
TGGACCAGGGAGACGACAAGAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               440-559, + strand, RNAz p=0.71997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-559, + strand, RNAz p=0.71997

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-563, gnl|bosTau2|chr10 (58443479-58444041)
               

               
               1-563, gnl|Hg17|chr14 (71125001-71125563)
               

               
               1-563, gnl|Mm7|chr12 (80334299-80334861)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr10 (58443479-58444041)
               

               
               1-563, gnl|Hg17|chr14 (71125001-71125563)
               

               
               1-563, gnl|Mm7|chr12 (80334299-80334861)

	1-563, gnl\|bosTau2\|chr10 (58443479-58444041)
	1-563, gnl\|Hg17\|chr14 (71125001-71125563)
	1-563, gnl\|Mm7\|chr12 (80334299-80334861)