Non-Coding RNA Search

Pig2-44D17

Sequence:


               
               TCATAGGTACGAACGTACACTCAGGCCCAGTCACTTCGGTTGGTAGGACAGATTGTGAGG
AGAAATGGAGGCATCCTTAAGGAGGAAAAAGTGTTTGCCTTTAGTTCCTGCATTATCCTG
TACAGGGGCTCCTGAGCTTTGGAGGCTGTTTCCAGGACAGGAGAACAACTCCCCTGTTTG
CAGCAGGAGACTTCGGTGCACAGTGACAACGCTGGAGTTCAAGAGGAAGCCAGCAGTGCT
GCACCATTGGCTTCAGACACCATTGTTGTTTGCCAGTTTTAAACTTAACTAGGGACAGAC
GAAGACCACCTTGAAATGCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATAGGTACGAACGTACACTCAGGCCCAGTCACTTCGGTTGGTAGGACAGATTGTGAGG
AGAAATGGAGGCATCCTTAAGGAGGAAAAAGTGTTTGCCTTTAGTTCCTGCATTATCCTG
TACAGGGGCTCCTGAGCTTTGGAGGCTGTTTCCAGGACAGGAGAACAACTCCCCTGTTTG
CAGCAGGAGACTTCGGTGCACAGTGACAACGCTGGAGTTCAAGAGGAAGCCAGCAGTGCT
GCACCATTGGCTTCAGACACCATTGTTGTTTGCCAGTTTTAAACTTAACTAGGGACAGAC
GAAGACCACCTTGAAATGCAGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-311, + strand, RNAz p=0.979361
               

               
               187-290, - strand, RNAz p=0.690161

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-311, + strand, RNAz p=0.979361
               

               
               187-290, - strand, RNAz p=0.690161

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               46-205, + strand, RNAmicro p=0.998615

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-205, + strand, RNAmicro p=0.998615

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-323, gnl|bosTau2|chr3 (29664107-29664429)
               

               
               1-323, gnl|canFam2|chr6 (44705496-44704910)
               

               
               1-323, gnl|echTel1|scaffold_290233 (102209-102797)
               

               
               1-323, gnl|galGal2|chr26 (79797-80305)
               

               
               1-323, gnl|hg17|chr1 (110601752-110602341)
               

               
               1-323, gnl|Hg17|chr1 (110602050-110602379)
               

               
               1-323, gnl|mm7|chr3 (107143828-107143243)
               

               
               1-323, gnl|Mm7|chr3 (107143526-107143204)
               

               
               1-323, gnl|monDom2|scaffold_0 (5808297-5807711)
               

               
               1-323, gnl|oryCun1|scaffold_209241 (79180-78591)
               

               
               1-323, gnl|panTro1|chr1 (111681081-111680492)
               

               
               1-323, gnl|rheMac2|chr1 (113413107-113413694)
               

               
               1-323, gnl|xenTro1|scaffold_19 (2697815-2698361)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-323, gnl|bosTau2|chr3 (29664107-29664429)
               

               
               1-323, gnl|canFam2|chr6 (44705496-44704910)
               

               
               1-323, gnl|echTel1|scaffold_290233 (102209-102797)
               

               
               1-323, gnl|galGal2|chr26 (79797-80305)
               

               
               1-323, gnl|hg17|chr1 (110601752-110602341)
               

               
               1-323, gnl|Hg17|chr1 (110602050-110602379)
               

               
               1-323, gnl|mm7|chr3 (107143828-107143243)
               

               
               1-323, gnl|Mm7|chr3 (107143526-107143204)
               

               
               1-323, gnl|monDom2|scaffold_0 (5808297-5807711)
               

               
               1-323, gnl|oryCun1|scaffold_209241 (79180-78591)
               

               
               1-323, gnl|panTro1|chr1 (111681081-111680492)
               

               
               1-323, gnl|rheMac2|chr1 (113413107-113413694)
               

               
               1-323, gnl|xenTro1|scaffold_19 (2697815-2698361)

	40-311, + strand, RNAz p=0.979361
	187-290, - strand, RNAz p=0.690161

	1-323, gnl\|bosTau2\|chr3 (29664107-29664429)
	1-323, gnl\|canFam2\|chr6 (44705496-44704910)
	1-323, gnl\|echTel1\|scaffold_290233 (102209-102797)
	1-323, gnl\|galGal2\|chr26 (79797-80305)
	1-323, gnl\|hg17\|chr1 (110601752-110602341)
	1-323, gnl\|Hg17\|chr1 (110602050-110602379)
	1-323, gnl\|mm7\|chr3 (107143828-107143243)
	1-323, gnl\|Mm7\|chr3 (107143526-107143204)
	1-323, gnl\|monDom2\|scaffold_0 (5808297-5807711)
	1-323, gnl\|oryCun1\|scaffold_209241 (79180-78591)
	1-323, gnl\|panTro1\|chr1 (111681081-111680492)
	1-323, gnl\|rheMac2\|chr1 (113413107-113413694)
	1-323, gnl\|xenTro1\|scaffold_19 (2697815-2698361)