Non-Coding RNA Search

Pig2-44E13

Sequence:


               
               CGACGCGCGGCGGCGCGGCAGCTGGACATCCCCCGCGGGCAGGGCACATGTTCCTGGACC
AGATGAAGCTTGAGGAGCCTTCCAGCTGTAAGATCTCAGGATAGGAGAACTCCCAAGTCT
CCATCTGCAGGAGGCTTGTCCTGCCTCTTCACCATGTCAGGAAGCCACATACCTTCTGCC
AGTGGCCCATTCTCAGCCCTGACTCCCAGCATGTGGCCCCAGGAGATCCTGGCCAAGTAC
ACACAGAAGGAAGAGGCAGTGGAGCAGCCAGGCATCTGCTATGATGAGTTCGGTTTCCGC
ATGGACAAGGAAGACGGCGACCCCCGGCCGGGCCGGCTGCTGGACGACCCCCCGCANAGG
CTGCGCTGGCAGGCCCACCTCGAGTTCACGCACAACCACGACGTGGGCGACCTCACCTGG
GACAAGATTGCCGTCTCCCTGCCCCGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGCGCGGCGGCGCGGCAGCTGGACATCCCCCGCGGGCAGGGCACATGTTCCTGGACC
AGATGAAGCTTGAGGAGCCTTCCAGCTGTAAGATCTCAGGATAGGAGAACTCCCAAGTCT
CCATCTGCAGGAGGCTTGTCCTGCCTCTTCACCATGTCAGGAAGCCACATACCTTCTGCC
AGTGGCCCATTCTCAGCCCTGACTCCCAGCATGTGGCCCCAGGAGATCCTGGCCAAGTAC
ACACAGAAGGAAGAGGCAGTGGAGCAGCCAGGCATCTGCTATGATGAGTTCGGTTTCCGC
ATGGACAAGGAAGACGGCGACCCCCGGCCGGGCCGGCTGCTGGACGACCCCCCGCANAGG
CTGCGCTGGCAGGCCCACCTCGAGTTCACGCACAACCACGACGTGGGCGACCTCACCTGG
GACAAGATTGCCGTCTCCCTGCCCCGCTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               139-246, - strand, RNAz p=0.999274

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-246, - strand, RNAz p=0.999274

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               139-246, gnl|bosTau2|chr5 (70092330-70092223)
               

               
               139-246, gnl|Hg17|chr22 (39122075-39122179)
               

               
               139-246, gnl|Mm7|chr15 (81087810-81087926)
               


               
               285-449, gnl|bosTau2|chr5 (70090573-70090406)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-246, gnl|bosTau2|chr5 (70092330-70092223)
               

               
               139-246, gnl|Hg17|chr22 (39122075-39122179)
               

               
               139-246, gnl|Mm7|chr15 (81087810-81087926)
               


               
               285-449, gnl|bosTau2|chr5 (70090573-70090406)

	139-246, gnl\|bosTau2\|chr5 (70092330-70092223)
	139-246, gnl\|Hg17\|chr22 (39122075-39122179)
	139-246, gnl\|Mm7\|chr15 (81087810-81087926)

	285-449, gnl\|bosTau2\|chr5 (70090573-70090406)