Non-Coding RNA Search

Pig2-44H13

Sequence:


               
               CCTCCTGGGCCAAGCCGGGCCACTTGCTTTGCCTCCCTGAAATGCCAGTCAGGGTCTGAG
TTCCCTGCCCATTCCCAATGGGGATGAGATACTGGGTCCCAAGGAGGCTGTCTTTGTCCC
CCCTTCTCAGCTGCTTGGGATAGAGTTGGGAGGCTTGGGGGCCAGGCCCCAAAAGCCAGA
AGTGATTTCTTCCAGAGGGAGCCCGAAAGGGGCTCAGGGCTGAGTGTGATGGGACAGAGA
TGCCTAGGACCTATTTTACTTTTTAACCTTCAGCCAGAGAAGTGAACTGGGGAGCCAAAC
ACCGGCGTGGGAGTTTGGGTCTGTGGACAGCAGCAGCATTAAGTGGAGAGGTGGTAAAGA
AAGGCCAGGCAGAAATCTGGAGAGAGCGAGAGAGGGAGAGGAGAAAATAGGAGGCGAGTT
AGCAGAGCTCCTCCAGTGCCCTCCTCTCTGTTTCATTGCAAATAAAGCAAAAGCAGCTCC
AGCGGCCTCTCAACCCCTCAGCCCAGGCCTCTGAGGGGTTTGGGGCAGTTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCTGGGCCAAGCCGGGCCACTTGCTTTGCCTCCCTGAAATGCCAGTCAGGGTCTGAG
TTCCCTGCCCATTCCCAATGGGGATGAGATACTGGGTCCCAAGGAGGCTGTCTTTGTCCC
CCCTTCTCAGCTGCTTGGGATAGAGTTGGGAGGCTTGGGGGCCAGGCCCCAAAAGCCAGA
AGTGATTTCTTCCAGAGGGAGCCCGAAAGGGGCTCAGGGCTGAGTGTGATGGGACAGAGA
TGCCTAGGACCTATTTTACTTTTTAACCTTCAGCCAGAGAAGTGAACTGGGGAGCCAAAC
ACCGGCGTGGGAGTTTGGGTCTGTGGACAGCAGCAGCATTAAGTGGAGAGGTGGTAAAGA
AAGGCCAGGCAGAAATCTGGAGAGAGCGAGAGAGGGAGAGGAGAAAATAGGAGGCGAGTT
AGCAGAGCTCCTCCAGTGCCCTCCTCTCTGTTTCATTGCAAATAAAGCAAAAGCAGCTCC
AGCGGCCTCTCAACCCCTCAGCCCAGGCCTCTGAGGGGTTTGGGGCAGTTCTCA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-118, - strand, RNAz p=0.960808
               

               
               80-261, - strand, RNAz p=0.979553
               

               
               378-495, + strand, RNAz p=0.747361

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.960808
               

               
               80-261, - strand, RNAz p=0.979553
               

               
               378-495, + strand, RNAz p=0.747361

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-534, gnl|bosTau2|chr5 (16761112-16760574)
               

               
               1-534, gnl|canFam2|chr27 (4242913-4241880)
               

               
               1-534, gnl|dasNov1|scaffold_135164 (1672-523)
               

               
               1-534, gnl|echTel1|scaffold_325344 (57267-56151)
               

               
               1-534, gnl|hg17|chr12 (52702943-52704052)
               

               
               1-534, gnl|Hg17|chr12 (52703070-52703631)
               

               
               1-534, gnl|loxAfr1|scaffold_12227 (52881-53979)
               

               
               1-534, gnl|mm7|chr15 (102990331-102991388)
               

               
               1-534, gnl|Mm7|chr15 (102990467-102990983)
               

               
               1-534, gnl|monDom2|scaffold_294 (351324-352471)
               

               
               1-534, gnl|oryCun1|scaffold_120480 (14092-15147)
               

               
               1-534, gnl|panTro1|chr10 (53951893-53953002)
               

               
               1-534, gnl|rheMac2|chr11 (51121689-51122790)
               

               
               1-534, gnl|rn3|chr7 (141846651-141847718)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-534, gnl|bosTau2|chr5 (16761112-16760574)
               

               
               1-534, gnl|canFam2|chr27 (4242913-4241880)
               

               
               1-534, gnl|dasNov1|scaffold_135164 (1672-523)
               

               
               1-534, gnl|echTel1|scaffold_325344 (57267-56151)
               

               
               1-534, gnl|hg17|chr12 (52702943-52704052)
               

               
               1-534, gnl|Hg17|chr12 (52703070-52703631)
               

               
               1-534, gnl|loxAfr1|scaffold_12227 (52881-53979)
               

               
               1-534, gnl|mm7|chr15 (102990331-102991388)
               

               
               1-534, gnl|Mm7|chr15 (102990467-102990983)
               

               
               1-534, gnl|monDom2|scaffold_294 (351324-352471)
               

               
               1-534, gnl|oryCun1|scaffold_120480 (14092-15147)
               

               
               1-534, gnl|panTro1|chr10 (53951893-53953002)
               

               
               1-534, gnl|rheMac2|chr11 (51121689-51122790)
               

               
               1-534, gnl|rn3|chr7 (141846651-141847718)

	1-118, - strand, RNAz p=0.960808
	80-261, - strand, RNAz p=0.979553
	378-495, + strand, RNAz p=0.747361

	1-534, gnl\|bosTau2\|chr5 (16761112-16760574)
	1-534, gnl\|canFam2\|chr27 (4242913-4241880)
	1-534, gnl\|dasNov1\|scaffold_135164 (1672-523)
	1-534, gnl\|echTel1\|scaffold_325344 (57267-56151)
	1-534, gnl\|hg17\|chr12 (52702943-52704052)
	1-534, gnl\|Hg17\|chr12 (52703070-52703631)
	1-534, gnl\|loxAfr1\|scaffold_12227 (52881-53979)
	1-534, gnl\|mm7\|chr15 (102990331-102991388)
	1-534, gnl\|Mm7\|chr15 (102990467-102990983)
	1-534, gnl\|monDom2\|scaffold_294 (351324-352471)
	1-534, gnl\|oryCun1\|scaffold_120480 (14092-15147)
	1-534, gnl\|panTro1\|chr10 (53951893-53953002)
	1-534, gnl\|rheMac2\|chr11 (51121689-51122790)
	1-534, gnl\|rn3\|chr7 (141846651-141847718)