Non-Coding RNA Search

Pig2-44M20

Sequence:


               
               GCGAGATGCCTCACATTGGGGGGCTGTCCCTCTTGTCCCACACTCAGCCCTGTCCCCCCT
CCTCACCCCAGGAATACCAGCCAGCACCCCATAAATAAATTCCGGAATAAGTAAAAACAG
TTAATTCAACAAACATTTTCTGCACCTCCTACCCTATGCCCAGCCGACCAGGCCTGATGA
ACACAGTCTCGAGAGAGCTAATTGGGGTCCTCGTTTGACCGCCACTTTCTTCTCGTCCCC
TTTTAAGCCAACCAGTTTTGTCCGGACGAGACAAAAACAACGGGGCCCGCTTTAAAGAAC
CGGGGCTTGGGGTCCACAATGGCTCCCAAACTTCTGAAAGGGGCTGATTGGATTATGTGG
CAAATGAAGGTGGAAGGATGACTTGGAGGGTGACAAATGAAGGGGGCGGAGATCCGCTGC
GAGTTAATCCAGGCCATTAGGAGGGACCTTTTGTCTCCTGAGGCTGGCAGGAGCTTTTAC
CACTGGGTCTGACGTCCTTAATGTAAGGACGCATAATTTATGGTCCGTGAAAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGATGCCTCACATTGGGGGGCTGTCCCTCTTGTCCCACACTCAGCCCTGTCCCCCCT
CCTCACCCCAGGAATACCAGCCAGCACCCCATAAATAAATTCCGGAATAAGTAAAAACAG
TTAATTCAACAAACATTTTCTGCACCTCCTACCCTATGCCCAGCCGACCAGGCCTGATGA
ACACAGTCTCGAGAGAGCTAATTGGGGTCCTCGTTTGACCGCCACTTTCTTCTCGTCCCC
TTTTAAGCCAACCAGTTTTGTCCGGACGAGACAAAAACAACGGGGCCCGCTTTAAAGAAC
CGGGGCTTGGGGTCCACAATGGCTCCCAAACTTCTGAAAGGGGCTGATTGGATTATGTGG
CAAATGAAGGTGGAAGGATGACTTGGAGGGTGACAAATGAAGGGGGCGGAGATCCGCTGC
GAGTTAATCCAGGCCATTAGGAGGGACCTTTTGTCTCCTGAGGCTGGCAGGAGCTTTTAC
CACTGGGTCTGACGTCCTTAATGTAAGGACGCATAATTTATGGTCCGTGAAAGCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               422-532, - strand, RNAz p=0.933869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-532, - strand, RNAz p=0.933869

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               175-532, gnl|bosTau2|chr21 (45523190-45523548)
               

               
               175-532, gnl|canFam2|chr8 (72100194-72100787)
               

               
               175-532, gnl|dasNov1|scaffold_285736 (558-1137)
               

               
               175-532, gnl|echTel1|scaffold_239897 (2183-2762)
               

               
               175-532, gnl|hg17|chr14 (100366485-100367083)
               

               
               175-532, gnl|Hg17|chr14 (100366771-100367130)
               

               
               175-532, gnl|loxAfr1|scaffold_15889 (21862-21273)
               

               
               175-532, gnl|mm7|chr12 (107066641-107067323)
               

               
               175-532, gnl|Mm7|chr12 (107066948-107067322)
               

               
               175-532, gnl|panTro1|chr15 (100923889-100924487)
               

               
               175-532, gnl|rheMac2|chr7 (164112493-164113088)
               

               
               175-532, gnl|rn3|chr6 (134127784-134128387)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-532, gnl|bosTau2|chr21 (45523190-45523548)
               

               
               175-532, gnl|canFam2|chr8 (72100194-72100787)
               

               
               175-532, gnl|dasNov1|scaffold_285736 (558-1137)
               

               
               175-532, gnl|echTel1|scaffold_239897 (2183-2762)
               

               
               175-532, gnl|hg17|chr14 (100366485-100367083)
               

               
               175-532, gnl|Hg17|chr14 (100366771-100367130)
               

               
               175-532, gnl|loxAfr1|scaffold_15889 (21862-21273)
               

               
               175-532, gnl|mm7|chr12 (107066641-107067323)
               

               
               175-532, gnl|Mm7|chr12 (107066948-107067322)
               

               
               175-532, gnl|panTro1|chr15 (100923889-100924487)
               

               
               175-532, gnl|rheMac2|chr7 (164112493-164113088)
               

               
               175-532, gnl|rn3|chr6 (134127784-134128387)

	175-532, gnl\|bosTau2\|chr21 (45523190-45523548)
	175-532, gnl\|canFam2\|chr8 (72100194-72100787)
	175-532, gnl\|dasNov1\|scaffold_285736 (558-1137)
	175-532, gnl\|echTel1\|scaffold_239897 (2183-2762)
	175-532, gnl\|hg17\|chr14 (100366485-100367083)
	175-532, gnl\|Hg17\|chr14 (100366771-100367130)
	175-532, gnl\|loxAfr1\|scaffold_15889 (21862-21273)
	175-532, gnl\|mm7\|chr12 (107066641-107067323)
	175-532, gnl\|Mm7\|chr12 (107066948-107067322)
	175-532, gnl\|panTro1\|chr15 (100923889-100924487)
	175-532, gnl\|rheMac2\|chr7 (164112493-164113088)
	175-532, gnl\|rn3\|chr6 (134127784-134128387)