Non-Coding RNA Search

Pig2-45J01

Sequence:


               
               CATGAAAACAAACAATTTGATTTCAACCAAATTGGTGGGTTTTTGTTTTTATCCTGATTT
TCACCCGAATTGTCACTCTCAAAAATAAACACTGATGCATTCCCAGAAAATATTTTTCAA
ATAAAAACTGACTCTGTTAAAGTTTGCCCTGATTCTTTCAAAACTGTGTACAAGACACTG
TCAACCAAAGTGACTTGCATATTTTTTTAAATAAACTTGAACATAtgcagctcggatttg
atccctagcctgggaacctccatgtgccgtggatgcagccctgaaaagacgaaagaaaga
aaaaCCTAAGACTTGCTCATCACGGGTGGTGGCAATGGACTGTCTCACATGACTGGGAAA
TCTACTTGAAATGTAAATGTTTTCTCATTAAAAAAAGGCAGCAGACTGATTTTTCATGTT
TCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAAAACAAACAATTTGATTTCAACCAAATTGGTGGGTTTTTGTTTTTATCCTGATTT
TCACCCGAATTGTCACTCTCAAAAATAAACACTGATGCATTCCCAGAAAATATTTTTCAA
ATAAAAACTGACTCTGTTAAAGTTTGCCCTGATTCTTTCAAAACTGTGTACAAGACACTG
TCAACCAAAGTGACTTGCATATTTTTTTAAATAAACTTGAACATAtgcagctcggatttg
atccctagcctgggaacctccatgtgccgtggatgcagccctgaaaagacgaaagaaaga
aaaaCCTAAGACTTGCTCATCACGGGTGGTGGCAATGGACTGTCTCACATGACTGGGAAA
TCTACTTGAAATGTAAATGTTTTCTCATTAAAAAAAGGCAGCAGACTGATTTTTCATGTT
TCTTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-232, + strand, RNAz p=0.91992
               

               
               5-164, - strand, RNAz p=0.974519

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-232, + strand, RNAz p=0.91992
               

               
               5-164, - strand, RNAz p=0.974519

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               2-232, gnl|bosTau2|chr16 (18791730-18791500)
               

               
               2-232, gnl|canFam2|chr7 (37596746-37598262)
               

               
               2-232, gnl|dasNov1|scaffold_44401 (914-2344)
               

               
               2-232, gnl|echTel1|scaffold_325382 (51337-49817)
               

               
               2-232, gnl|hg17|chr1 (239982881-239984422)
               

               
               2-232, gnl|Hg17|chr1 (239983528-239983758)
               

               
               2-232, gnl|loxAfr1|scaffold_4145 (64309-62784)
               

               
               2-232, gnl|mm7|chr1 (176981483-176982968)
               

               
               2-232, gnl|Mm7|chr1 (176982101-176982331)
               

               
               2-232, gnl|monDom2|scaffold_13 (40354869-40353307)
               

               
               2-232, gnl|oryCun1|scaffold_205583 (45802-47339)
               

               
               2-232, gnl|panTro1|chr1 (223976870-223978411)
               

               
               2-232, gnl|rheMac2|chr1 (213610034-213608498)
               

               
               2-232, gnl|rn3|chr13 (92986399-92987905)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-232, gnl|bosTau2|chr16 (18791730-18791500)
               

               
               2-232, gnl|canFam2|chr7 (37596746-37598262)
               

               
               2-232, gnl|dasNov1|scaffold_44401 (914-2344)
               

               
               2-232, gnl|echTel1|scaffold_325382 (51337-49817)
               

               
               2-232, gnl|hg17|chr1 (239982881-239984422)
               

               
               2-232, gnl|Hg17|chr1 (239983528-239983758)
               

               
               2-232, gnl|loxAfr1|scaffold_4145 (64309-62784)
               

               
               2-232, gnl|mm7|chr1 (176981483-176982968)
               

               
               2-232, gnl|Mm7|chr1 (176982101-176982331)
               

               
               2-232, gnl|monDom2|scaffold_13 (40354869-40353307)
               

               
               2-232, gnl|oryCun1|scaffold_205583 (45802-47339)
               

               
               2-232, gnl|panTro1|chr1 (223976870-223978411)
               

               
               2-232, gnl|rheMac2|chr1 (213610034-213608498)
               

               
               2-232, gnl|rn3|chr13 (92986399-92987905)

	2-232, + strand, RNAz p=0.91992
	5-164, - strand, RNAz p=0.974519

	2-232, gnl\|bosTau2\|chr16 (18791730-18791500)
	2-232, gnl\|canFam2\|chr7 (37596746-37598262)
	2-232, gnl\|dasNov1\|scaffold_44401 (914-2344)
	2-232, gnl\|echTel1\|scaffold_325382 (51337-49817)
	2-232, gnl\|hg17\|chr1 (239982881-239984422)
	2-232, gnl\|Hg17\|chr1 (239983528-239983758)
	2-232, gnl\|loxAfr1\|scaffold_4145 (64309-62784)
	2-232, gnl\|mm7\|chr1 (176981483-176982968)
	2-232, gnl\|Mm7\|chr1 (176982101-176982331)
	2-232, gnl\|monDom2\|scaffold_13 (40354869-40353307)
	2-232, gnl\|oryCun1\|scaffold_205583 (45802-47339)
	2-232, gnl\|panTro1\|chr1 (223976870-223978411)
	2-232, gnl\|rheMac2\|chr1 (213610034-213608498)
	2-232, gnl\|rn3\|chr13 (92986399-92987905)