Non-Coding RNA Search

Pig2-45O13

Sequence:


               
               ATCAAATGATATGTGGTCTGCAGGAAGCGAAAGTATTTAAATAATTAAGCAGTTCTTTCT
AGAGCCTCTTTATATGATGATTTTCTAGACTTCAAATCAGTTTTCCTCATCCAGCCTCTG
TATAATATATAGTTATTTCAAATCAGCTTTACTTACTGAGCTTTTTCTAGTAATGGAGCT
TTGTCAGCAAAAACTGTGCGTACCAGCAAATGGTGAATGATGGGCTCGTGTCAGAAAGGA
GCTTGAGAGGTGCTTTCTGTTGGGAGATGGATGGGTCTGGAGCAGGAGCTTGAAGCTCTC
CGAGTGTAATAGTTTCAGAGAAAAGGTACGTCTGAGTGAGGGGGCGAGTGCTTCATCACT
TAAGAGCGGGTATTTCACACACCCAAGCCAAATGCCACACGTGCTGTTGAAACCAGGGTT
TCATGTTTGGATGTGTGGGAAATGTGTGAAGTTATTTCCCATGGTCTTGGTTGTGGTTTC
TTCTCTTGGCCCTTCACACCTGCTCTCTCAGAGGTGCTCTGGGCAGGATGGCAGGGAGTA
CAGTAGCTACTGAAATTGTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAATGATATGTGGTCTGCAGGAAGCGAAAGTATTTAAATAATTAAGCAGTTCTTTCT
AGAGCCTCTTTATATGATGATTTTCTAGACTTCAAATCAGTTTTCCTCATCCAGCCTCTG
TATAATATATAGTTATTTCAAATCAGCTTTACTTACTGAGCTTTTTCTAGTAATGGAGCT
TTGTCAGCAAAAACTGTGCGTACCAGCAAATGGTGAATGATGGGCTCGTGTCAGAAAGGA
GCTTGAGAGGTGCTTTCTGTTGGGAGATGGATGGGTCTGGAGCAGGAGCTTGAAGCTCTC
CGAGTGTAATAGTTTCAGAGAAAAGGTACGTCTGAGTGAGGGGGCGAGTGCTTCATCACT
TAAGAGCGGGTATTTCACACACCCAAGCCAAATGCCACACGTGCTGTTGAAACCAGGGTT
TCATGTTTGGATGTGTGGGAAATGTGTGAAGTTATTTCCCATGGTCTTGGTTGTGGTTTC
TTCTCTTGGCCCTTCACACCTGCTCTCTCAGAGGTGCTCTGGGCAGGATGGCAGGGAGTA
CAGTAGCTACTGAAATTGTAATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               224-382, - strand, RNAz p=0.944406
               

               
               239-398, + strand, RNAz p=0.88522

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-382, - strand, RNAz p=0.944406
               

               
               239-398, + strand, RNAz p=0.88522

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-435, gnl|bosTau2|chr6 (36131631-36131198)
               

               
               1-435, gnl|canFam2|chr4 (28876280-28876625)
               

               
               1-435, gnl|echTel1|scaffold_302295 (6572-6919)
               

               
               1-435, gnl|galGal2|chr6 (13765950-13765606)
               

               
               1-435, gnl|hg17|chr10 (76916859-76917204)
               

               
               1-435, gnl|Hg17|chr10 (76916868-76917313)
               

               
               1-435, gnl|loxAfr1|scaffold_32040 (8368-8714)
               

               
               1-435, gnl|mm7|chr14 (19727508-19727853)
               

               
               1-435, gnl|Mm7|chr14 (19727517-19727951)
               

               
               1-435, gnl|monDom2|scaffold_14 (3683339-3683685)
               

               
               1-435, gnl|panTro1|chr8 (78179748-78180093)
               

               
               1-435, gnl|rheMac2|chr9 (61524726-61524381)
               

               
               1-435, gnl|rn3|chr15 (2275219-2274874)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-435, gnl|bosTau2|chr6 (36131631-36131198)
               

               
               1-435, gnl|canFam2|chr4 (28876280-28876625)
               

               
               1-435, gnl|echTel1|scaffold_302295 (6572-6919)
               

               
               1-435, gnl|galGal2|chr6 (13765950-13765606)
               

               
               1-435, gnl|hg17|chr10 (76916859-76917204)
               

               
               1-435, gnl|Hg17|chr10 (76916868-76917313)
               

               
               1-435, gnl|loxAfr1|scaffold_32040 (8368-8714)
               

               
               1-435, gnl|mm7|chr14 (19727508-19727853)
               

               
               1-435, gnl|Mm7|chr14 (19727517-19727951)
               

               
               1-435, gnl|monDom2|scaffold_14 (3683339-3683685)
               

               
               1-435, gnl|panTro1|chr8 (78179748-78180093)
               

               
               1-435, gnl|rheMac2|chr9 (61524726-61524381)
               

               
               1-435, gnl|rn3|chr15 (2275219-2274874)

	224-382, - strand, RNAz p=0.944406
	239-398, + strand, RNAz p=0.88522

	1-435, gnl\|bosTau2\|chr6 (36131631-36131198)
	1-435, gnl\|canFam2\|chr4 (28876280-28876625)
	1-435, gnl\|echTel1\|scaffold_302295 (6572-6919)
	1-435, gnl\|galGal2\|chr6 (13765950-13765606)
	1-435, gnl\|hg17\|chr10 (76916859-76917204)
	1-435, gnl\|Hg17\|chr10 (76916868-76917313)
	1-435, gnl\|loxAfr1\|scaffold_32040 (8368-8714)
	1-435, gnl\|mm7\|chr14 (19727508-19727853)
	1-435, gnl\|Mm7\|chr14 (19727517-19727951)
	1-435, gnl\|monDom2\|scaffold_14 (3683339-3683685)
	1-435, gnl\|panTro1\|chr8 (78179748-78180093)
	1-435, gnl\|rheMac2\|chr9 (61524726-61524381)
	1-435, gnl\|rn3\|chr15 (2275219-2274874)