Non-Coding RNA Search

Pig2-47E03

Sequence:


               
               GTAAACTCTGAGAAGGGTGGGGGTGGGTCTAACTGTCTTAACATTTACTTCACTGCTCGT
CAGAATACACTCCAGACCCAAAATTGTGCTAGTCACTTGACAGTGACCACTACAGAGTGC
TAAGAAGAGAAGATCAAGGGCATGAAAATGGGGGAGAGTGTGCTGTTTCTGTTTTTTAAA
TGAGTTGATGTACCCTTATATAAATATATATATATATATATATATAAACACACACAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAACTCTGAGAAGGGTGGGGGTGGGTCTAACTGTCTTAACATTTACTTCACTGCTCGT
CAGAATACACTCCAGACCCAAAATTGTGCTAGTCACTTGACAGTGACCACTACAGAGTGC
TAAGAAGAGAAGATCAAGGGCATGAAAATGGGGGAGAGTGTGCTGTTTCTGTTTTTTAAA
TGAGTTGATGTACCCTTATATAAATATATATATATATATATATATAAACACACACAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               140-237, - strand, RNAz p=0.900661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-237, - strand, RNAz p=0.900661

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-237, gnl|bosTau2|chr17 (34331034-34331273)
               

               
               1-237, gnl|canFam2|chrX (25049213-25049512)
               

               
               1-237, gnl|dasNov1|scaffold_2000 (52980-52681)
               

               
               1-237, gnl|echTel1|scaffold_285549 (18703-18991)
               

               
               1-237, gnl|galGal2|chr1 (109492292-109491991)
               

               
               1-237, gnl|hg17|chrX (29734134-29734432)
               

               
               1-237, gnl|Hg17|chrX (29734233-29734469)
               

               
               1-237, gnl|loxAfr1|scaffold_27068 (35524-35824)
               

               
               1-237, gnl|mm7|chrX (82133358-82133055)
               

               
               1-237, gnl|Mm7|chrX (82133257-82133017)
               

               
               1-237, gnl|monDom2|scaffold_48 (549156-548873)
               

               
               1-237, gnl|oryCun1|scaffold_213488 (69623-69325)
               

               
               1-237, gnl|panTro1|chrX (30669516-30669814)
               

               
               1-237, gnl|rheMac2|chrX (27828916-27829214)
               

               
               1-237, gnl|rn3|chrX (73765086-73764782)
               

               
               1-237, gnl|xenTro1|scaffold_32 (2607564-2607859)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-237, gnl|bosTau2|chr17 (34331034-34331273)
               

               
               1-237, gnl|canFam2|chrX (25049213-25049512)
               

               
               1-237, gnl|dasNov1|scaffold_2000 (52980-52681)
               

               
               1-237, gnl|echTel1|scaffold_285549 (18703-18991)
               

               
               1-237, gnl|galGal2|chr1 (109492292-109491991)
               

               
               1-237, gnl|hg17|chrX (29734134-29734432)
               

               
               1-237, gnl|Hg17|chrX (29734233-29734469)
               

               
               1-237, gnl|loxAfr1|scaffold_27068 (35524-35824)
               

               
               1-237, gnl|mm7|chrX (82133358-82133055)
               

               
               1-237, gnl|Mm7|chrX (82133257-82133017)
               

               
               1-237, gnl|monDom2|scaffold_48 (549156-548873)
               

               
               1-237, gnl|oryCun1|scaffold_213488 (69623-69325)
               

               
               1-237, gnl|panTro1|chrX (30669516-30669814)
               

               
               1-237, gnl|rheMac2|chrX (27828916-27829214)
               

               
               1-237, gnl|rn3|chrX (73765086-73764782)
               

               
               1-237, gnl|xenTro1|scaffold_32 (2607564-2607859)

	1-237, gnl\|bosTau2\|chr17 (34331034-34331273)
	1-237, gnl\|canFam2\|chrX (25049213-25049512)
	1-237, gnl\|dasNov1\|scaffold_2000 (52980-52681)
	1-237, gnl\|echTel1\|scaffold_285549 (18703-18991)
	1-237, gnl\|galGal2\|chr1 (109492292-109491991)
	1-237, gnl\|hg17\|chrX (29734134-29734432)
	1-237, gnl\|Hg17\|chrX (29734233-29734469)
	1-237, gnl\|loxAfr1\|scaffold_27068 (35524-35824)
	1-237, gnl\|mm7\|chrX (82133358-82133055)
	1-237, gnl\|Mm7\|chrX (82133257-82133017)
	1-237, gnl\|monDom2\|scaffold_48 (549156-548873)
	1-237, gnl\|oryCun1\|scaffold_213488 (69623-69325)
	1-237, gnl\|panTro1\|chrX (30669516-30669814)
	1-237, gnl\|rheMac2\|chrX (27828916-27829214)
	1-237, gnl\|rn3\|chrX (73765086-73764782)
	1-237, gnl\|xenTro1\|scaffold_32 (2607564-2607859)