Non-Coding RNA Search

Pig2-47N01

Sequence:


               
               ATCGAATGTTATCTACTCCTTGGTCTCTACACAAAGGGCTACAAACCAAAGCCTCATCCT
GCACCCTTGCCTCAAGCAGGATGAAAGCTCAGAAACTCCTCTCTCTGGGGTACACTTTCT
TGCCTCTGCTGTTTATTCAGCAGGCCTGGGCTCAGTTCCCCAGAGAGTGTACCACCATTG
AGGCTTTGAGAAGTGGGGTATGTTGCCCAGATCTGTCCCCACTGTCTGGGCCCGGGACTG
ACCGCTGTGGCTTCTCCTCAGGGAGGGGCAGGTGTGAGGCCGTGACAGCAGACTCCCGAC
CCCACAGCCACCACTACCACCATGATGGCAGAGATGACCGAGAGGGTTGGCCCACACGGT
TCTTCAACAGGACATGCCACTGCAACGGCAATTTTTCAGGACACAACTGTGGGACTTGCC
GTCCTGGATGGAGAGGACCTGCCTGTGACCAGAAGGTTCTCACAGTCAGGAGAAACCTAC
TGGACCTAAGTACAGAAGAAAAGAACCATTTTGTACGGGCCCTGGATATGGCAAAGCGCA
CAATGCACCCTCAGTTCGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGAATGTTATCTACTCCTTGGTCTCTACACAAAGGGCTACAAACCAAAGCCTCATCCT
GCACCCTTGCCTCAAGCAGGATGAAAGCTCAGAAACTCCTCTCTCTGGGGTACACTTTCT
TGCCTCTGCTGTTTATTCAGCAGGCCTGGGCTCAGTTCCCCAGAGAGTGTACCACCATTG
AGGCTTTGAGAAGTGGGGTATGTTGCCCAGATCTGTCCCCACTGTCTGGGCCCGGGACTG
ACCGCTGTGGCTTCTCCTCAGGGAGGGGCAGGTGTGAGGCCGTGACAGCAGACTCCCGAC
CCCACAGCCACCACTACCACCATGATGGCAGAGATGACCGAGAGGGTTGGCCCACACGGT
TCTTCAACAGGACATGCCACTGCAACGGCAATTTTTCAGGACACAACTGTGGGACTTGCC
GTCCTGGATGGAGAGGACCTGCCTGTGACCAGAAGGTTCTCACAGTCAGGAGAAACCTAC
TGGACCTAAGTACAGAAGAAAAGAACCATTTTGTACGGGCCCTGGATATGGCAAAGCGCA
CAATGCACCCTCAGTTCGTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32186767|gb|AAP72293.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32186767|gb|AAP72293.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-237, - strand, RNAz p=0.989704
               

               
               358-476, + strand, RNAz p=0.660035

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-237, - strand, RNAz p=0.989704
               

               
               358-476, + strand, RNAz p=0.660035

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-484, gnl|bosTau2|chr8 (17248488-17248006)
               

               
               4-484, gnl|Hg17|chr9 (12683915-12684402)
               

               
               4-484, gnl|Mm7|chr4 (80238718-80239195)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-484, gnl|bosTau2|chr8 (17248488-17248006)
               

               
               4-484, gnl|Hg17|chr9 (12683915-12684402)
               

               
               4-484, gnl|Mm7|chr4 (80238718-80239195)

	38-237, - strand, RNAz p=0.989704
	358-476, + strand, RNAz p=0.660035

	4-484, gnl\|bosTau2\|chr8 (17248488-17248006)
	4-484, gnl\|Hg17\|chr9 (12683915-12684402)
	4-484, gnl\|Mm7\|chr4 (80238718-80239195)