Non-Coding RNA Search

Pig2-48B20

Sequence:


               
               AAGAACGCACTCTCTTTTACATTGTTTAATGCATTTCTGTCCGGGTGGCGTTCTGGTCAC
CTCCCACCACCCGCCTCATGCCCCGCCCCTCCCGAAGCTGTTATCCTTTTTAAGGATGCT
GAACAGGCAGGAGGAAGGGATTTTCTAAAAGTTATATTGATAAACACACTTGCACAAACA
TATGCTAGGCACACACATAAACTATAAACATTAGCGAAAAACACAATATGGCGTACAGCT
ACGCTACCTAGCACGGTAATCCGCTGATCTCTTAACGCTGAACCCAGTTGAATGGGGTCA
GTAGCAGGGTGACAGTTTTCCAATAAAAATTTGAATGAACCAGGAAGTAATTAAAGCCTG
TTCGTTAAGTACCTGGCCTCAAAAATCACCATTGGCCCAAGCAAAGTTAAACTTGTTAAT
CTTCTAGACACGTGAAAATTGTATTAACTACTTCTTACCCTTAAGAAAAGCCAAAATGTC
GCTAAAGTGCAGTTTTCTCACTGCGTGGTCATGTGTAAATTTCAGCTAAGGAAATTAGCA
GAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAACGCACTCTCTTTTACATTGTTTAATGCATTTCTGTCCGGGTGGCGTTCTGGTCAC
CTCCCACCACCCGCCTCATGCCCCGCCCCTCCCGAAGCTGTTATCCTTTTTAAGGATGCT
GAACAGGCAGGAGGAAGGGATTTTCTAAAAGTTATATTGATAAACACACTTGCACAAACA
TATGCTAGGCACACACATAAACTATAAACATTAGCGAAAAACACAATATGGCGTACAGCT
ACGCTACCTAGCACGGTAATCCGCTGATCTCTTAACGCTGAACCCAGTTGAATGGGGTCA
GTAGCAGGGTGACAGTTTTCCAATAAAAATTTGAATGAACCAGGAAGTAATTAAAGCCTG
TTCGTTAAGTACCTGGCCTCAAAAATCACCATTGGCCCAAGCAAAGTTAAACTTGTTAAT
CTTCTAGACACGTGAAAATTGTATTAACTACTTCTTACCCTTAAGAAAAGCCAAAATGTC
GCTAAAGTGCAGTTTTCTCACTGCGTGGTCATGTGTAAATTTCAGCTAAGGAAATTAGCA
GAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               12-170, - strand, RNAz p=0.949288

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-170, - strand, RNAz p=0.949288

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-543, gnl|bosTau2|chr1 (34972865-34972345)
               

               
               12-543, gnl|Hg17|chr3 (116347975-116347466)
               

               
               12-543, gnl|Mm7|chr16 (42640736-42641265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-543, gnl|bosTau2|chr1 (34972865-34972345)
               

               
               12-543, gnl|Hg17|chr3 (116347975-116347466)
               

               
               12-543, gnl|Mm7|chr16 (42640736-42641265)

	12-543, gnl\|bosTau2\|chr1 (34972865-34972345)
	12-543, gnl\|Hg17\|chr3 (116347975-116347466)
	12-543, gnl\|Mm7\|chr16 (42640736-42641265)