Non-Coding RNA Search

Pig2-48H09

Sequence:


               
               ACCACGAAGCTCATGGTGGTGCCGTCAAAGGAGGGGGGGGCAATGATCCTCGGCCCCAGG
GGCTGCGAAGTGATGCTGATGACAGGCTTACCGTGCAGCTGAGCGAAGCCCTTGGCCCCC
ACCAGCTGGGATGTGGCTGCTGGGGCANAGGAGGAAGAGGAGGCGGGAGACTGACCAGAG
GCCATGAAGTAGGGGGCCTCAAGAAACGGGGCAGCTGCCTCTTTGCTGGGGGGCTCTGCT
GCCATGGGCGAGAGCTCACCGCCCCCCGGAGTGTGAGCAATTGGTGTGGGCTGCANGGCG
TTGGCGGGCATCACCGTGGGCAGAAACCCGGGGTAGATCATGTAGGTGGGTCCGTAGGCC
CCCGGACTCAGGGCCAGGGGAGGCACAGGGAGGGACATGGGAGCCAAAGCCTGCTGCTGG
GAGGTCATGGGCACATCCACATACTGCCCTGTCTCGGGGTCAAACAGTCTCCGGGTCATG
GGCTGCACTGGTGTGTCCACCAGATAGTACTGGCCAGTCGTCACGTCCAGGAGCATCTTG
CGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACGAAGCTCATGGTGGTGCCGTCAAAGGAGGGGGGGGCAATGATCCTCGGCCCCAGG
GGCTGCGAAGTGATGCTGATGACAGGCTTACCGTGCAGCTGAGCGAAGCCCTTGGCCCCC
ACCAGCTGGGATGTGGCTGCTGGGGCANAGGAGGAAGAGGAGGCGGGAGACTGACCAGAG
GCCATGAAGTAGGGGGCCTCAAGAAACGGGGCAGCTGCCTCTTTGCTGGGGGGCTCTGCT
GCCATGGGCGAGAGCTCACCGCCCCCCGGAGTGTGAGCAATTGGTGTGGGCTGCANGGCG
TTGGCGGGCATCACCGTGGGCAGAAACCCGGGGTAGATCATGTAGGTGGGTCCGTAGGCC
CCCGGACTCAGGGCCAGGGGAGGCACAGGGAGGGACATGGGAGCCAAAGCCTGCTGCTGG
GAGGTCATGGGCACATCCACATACTGCCCTGTCTCGGGGTCAAACAGTCTCCGGGTCATG
GGCTGCACTGGTGTGTCCACCAGATAGTACTGGCCAGTCGTCACGTCCAGGAGCATCTTG
CGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55623690|ref|XP_526780.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623690|ref|XP_526780.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-279, + strand, RNAz p=0.833835
               

               
               402-521, + strand, RNAz p=0.929817

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-279, + strand, RNAz p=0.833835
               

               
               402-521, + strand, RNAz p=0.929817

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-543, gnl|bosTau2|chr6 (9284087-9284629)
               

               
               1-543, gnl|canFam2|chr32 (24576453-24576853)
               

               
               1-543, gnl|danRer3|chr23 (8740696-8741064)
               

               
               1-543, gnl|dasNov1|scaffold_5628 (57874-57474)
               

               
               1-543, gnl|echTel1|scaffold_283679 (81266-81663)
               

               
               1-543, gnl|fr1|chrUn (117513696-117514081)
               

               
               1-543, gnl|hg17|chr4 (100927597-100927997)
               

               
               1-543, gnl|Hg17|chr4 (100927615-100928157)
               

               
               1-543, gnl|loxAfr1|scaffold_2458 (82671-83070)
               

               
               1-543, gnl|mm7|chr3 (137878657-137878261)
               

               
               1-543, gnl|Mm7|chr3 (137878638-137878099)
               

               
               1-543, gnl|monDom2|scaffold_37 (13107067-13106652)
               

               
               1-543, gnl|oryCun1|scaffold_196354 (111769-111373)
               

               
               1-543, gnl|panTro1|chr3 (117304134-117304534)
               

               
               1-543, gnl|rheMac2|chr5 (92618049-92618449)
               

               
               1-543, gnl|rn3|chr2 (235576203-235575807)
               

               
               1-543, gnl|tetNig1|chrUn_random (8364337-8363952)
               

               
               1-543, gnl|xenTro1|scaffold_785 (104426-104817)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-543, gnl|bosTau2|chr6 (9284087-9284629)
               

               
               1-543, gnl|canFam2|chr32 (24576453-24576853)
               

               
               1-543, gnl|danRer3|chr23 (8740696-8741064)
               

               
               1-543, gnl|dasNov1|scaffold_5628 (57874-57474)
               

               
               1-543, gnl|echTel1|scaffold_283679 (81266-81663)
               

               
               1-543, gnl|fr1|chrUn (117513696-117514081)
               

               
               1-543, gnl|hg17|chr4 (100927597-100927997)
               

               
               1-543, gnl|Hg17|chr4 (100927615-100928157)
               

               
               1-543, gnl|loxAfr1|scaffold_2458 (82671-83070)
               

               
               1-543, gnl|mm7|chr3 (137878657-137878261)
               

               
               1-543, gnl|Mm7|chr3 (137878638-137878099)
               

               
               1-543, gnl|monDom2|scaffold_37 (13107067-13106652)
               

               
               1-543, gnl|oryCun1|scaffold_196354 (111769-111373)
               

               
               1-543, gnl|panTro1|chr3 (117304134-117304534)
               

               
               1-543, gnl|rheMac2|chr5 (92618049-92618449)
               

               
               1-543, gnl|rn3|chr2 (235576203-235575807)
               

               
               1-543, gnl|tetNig1|chrUn_random (8364337-8363952)
               

               
               1-543, gnl|xenTro1|scaffold_785 (104426-104817)

	40-279, + strand, RNAz p=0.833835
	402-521, + strand, RNAz p=0.929817

	1-543, gnl\|bosTau2\|chr6 (9284087-9284629)
	1-543, gnl\|canFam2\|chr32 (24576453-24576853)
	1-543, gnl\|danRer3\|chr23 (8740696-8741064)
	1-543, gnl\|dasNov1\|scaffold_5628 (57874-57474)
	1-543, gnl\|echTel1\|scaffold_283679 (81266-81663)
	1-543, gnl\|fr1\|chrUn (117513696-117514081)
	1-543, gnl\|hg17\|chr4 (100927597-100927997)
	1-543, gnl\|Hg17\|chr4 (100927615-100928157)
	1-543, gnl\|loxAfr1\|scaffold_2458 (82671-83070)
	1-543, gnl\|mm7\|chr3 (137878657-137878261)
	1-543, gnl\|Mm7\|chr3 (137878638-137878099)
	1-543, gnl\|monDom2\|scaffold_37 (13107067-13106652)
	1-543, gnl\|oryCun1\|scaffold_196354 (111769-111373)
	1-543, gnl\|panTro1\|chr3 (117304134-117304534)
	1-543, gnl\|rheMac2\|chr5 (92618049-92618449)
	1-543, gnl\|rn3\|chr2 (235576203-235575807)
	1-543, gnl\|tetNig1\|chrUn_random (8364337-8363952)
	1-543, gnl\|xenTro1\|scaffold_785 (104426-104817)