Non-Coding RNA Search

Pig2-49G23

Sequence:


               
               TGGCCTCCTCTACTACTACCAATCCGGGGGCCGGCTGCGGCCGCCGGTCAACGTCTCCCT
GGACGCCTTCGCGGCTGAGATCCGCTGCTACCGACCGGGGGACGATGCCTTGGAGCGCTT
ACGGGAGGACGAGGGCTTCATCAAGGAGGATGACAAGCCCTTGCCCCGCAACGAGTTCCA
CCGCCAGGTGTGGCTGATCTTCGACTACCCTGAGAGCTCGGGCTCCGCGAGGGCCATCGC
CATCGTCTCAATCCTTGTCATCCTGATACTCCATCATCACCTTCTGCTTGGAGACCCTGC
CTGAGTTCAGGGATGAACGCGAGCTGCTGCGCCATCCCCCGGTGCACCACCAGCCCCCTG
GACCCGCCCCAGGGGCCAATGGCAGCGGGGCAGCGGCGGCGCCGCCTCCCTCAGGTCCCA
CAGTGGCGCCTCTCCTGCCCAGGACCCTGGCGGACCCCTTCTTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTCCTCTACTACTACCAATCCGGGGGCCGGCTGCGGCCGCCGGTCAACGTCTCCCT
GGACGCCTTCGCGGCTGAGATCCGCTGCTACCGACCGGGGGACGATGCCTTGGAGCGCTT
ACGGGAGGACGAGGGCTTCATCAAGGAGGATGACAAGCCCTTGCCCCGCAACGAGTTCCA
CCGCCAGGTGTGGCTGATCTTCGACTACCCTGAGAGCTCGGGCTCCGCGAGGGCCATCGC
CATCGTCTCAATCCTTGTCATCCTGATACTCCATCATCACCTTCTGCTTGGAGACCCTGC
CTGAGTTCAGGGATGAACGCGAGCTGCTGCGCCATCCCCCGGTGCACCACCAGCCCCCTG
GACCCGCCCCAGGGGCCAATGGCAGCGGGGCAGCGGCGGCGCCGCCTCCCTCAGGTCCCA
CAGTGGCGCCTCTCCTGCCCAGGACCCTGGCGGACCCCTTCTTCATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-236, - strand, RNAz p=0.832886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-236, - strand, RNAz p=0.832886

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-325, gnl|bosTau2|chr15 (37814030-37813704)
               

               
               1-325, gnl|canFam2|chr21 (53309195-53310047)
               

               
               1-325, gnl|danRer3|chr7 (22629182-22629976)
               

               
               1-325, gnl|dasNov1|scaffold_21560 (39951-39143)
               

               
               1-325, gnl|echTel1|scaffold_304200 (47419-46565)
               

               
               1-325, gnl|fr1|chrUn (94916920-94917714)
               

               
               1-325, gnl|galGal2|chr3 (44032299-44031457)
               

               
               1-325, gnl|hg17|chr11 (29989462-29990316)
               

               
               1-325, gnl|Hg17|chr11 (29990115-29989789)
               

               
               1-325, gnl|loxAfr1|scaffold_5841 (32353-31497)
               

               
               1-325, gnl|mm7|chr2 (107147054-107146200)
               

               
               1-325, gnl|Mm7|chr2 (107146399-107146725)
               

               
               1-325, gnl|monDom2|scaffold_10 (75835936-75836793)
               

               
               1-325, gnl|oryCun1|scaffold_185854 (66283-67137)
               

               
               1-325, gnl|panTro1|chr9 (30335137-30335991)
               

               
               1-325, gnl|rheMac2|chr14 (41763641-41762787)
               

               
               1-325, gnl|rn3|chr3 (92679644-92678790)
               

               
               1-325, gnl|tetNig1|chr5 (11140107-11140901)
               

               
               1-325, gnl|xenTro1|scaffold_331 (186212-185304)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-325, gnl|bosTau2|chr15 (37814030-37813704)
               

               
               1-325, gnl|canFam2|chr21 (53309195-53310047)
               

               
               1-325, gnl|danRer3|chr7 (22629182-22629976)
               

               
               1-325, gnl|dasNov1|scaffold_21560 (39951-39143)
               

               
               1-325, gnl|echTel1|scaffold_304200 (47419-46565)
               

               
               1-325, gnl|fr1|chrUn (94916920-94917714)
               

               
               1-325, gnl|galGal2|chr3 (44032299-44031457)
               

               
               1-325, gnl|hg17|chr11 (29989462-29990316)
               

               
               1-325, gnl|Hg17|chr11 (29990115-29989789)
               

               
               1-325, gnl|loxAfr1|scaffold_5841 (32353-31497)
               

               
               1-325, gnl|mm7|chr2 (107147054-107146200)
               

               
               1-325, gnl|Mm7|chr2 (107146399-107146725)
               

               
               1-325, gnl|monDom2|scaffold_10 (75835936-75836793)
               

               
               1-325, gnl|oryCun1|scaffold_185854 (66283-67137)
               

               
               1-325, gnl|panTro1|chr9 (30335137-30335991)
               

               
               1-325, gnl|rheMac2|chr14 (41763641-41762787)
               

               
               1-325, gnl|rn3|chr3 (92679644-92678790)
               

               
               1-325, gnl|tetNig1|chr5 (11140107-11140901)
               

               
               1-325, gnl|xenTro1|scaffold_331 (186212-185304)

	1-325, gnl\|bosTau2\|chr15 (37814030-37813704)
	1-325, gnl\|canFam2\|chr21 (53309195-53310047)
	1-325, gnl\|danRer3\|chr7 (22629182-22629976)
	1-325, gnl\|dasNov1\|scaffold_21560 (39951-39143)
	1-325, gnl\|echTel1\|scaffold_304200 (47419-46565)
	1-325, gnl\|fr1\|chrUn (94916920-94917714)
	1-325, gnl\|galGal2\|chr3 (44032299-44031457)
	1-325, gnl\|hg17\|chr11 (29989462-29990316)
	1-325, gnl\|Hg17\|chr11 (29990115-29989789)
	1-325, gnl\|loxAfr1\|scaffold_5841 (32353-31497)
	1-325, gnl\|mm7\|chr2 (107147054-107146200)
	1-325, gnl\|Mm7\|chr2 (107146399-107146725)
	1-325, gnl\|monDom2\|scaffold_10 (75835936-75836793)
	1-325, gnl\|oryCun1\|scaffold_185854 (66283-67137)
	1-325, gnl\|panTro1\|chr9 (30335137-30335991)
	1-325, gnl\|rheMac2\|chr14 (41763641-41762787)
	1-325, gnl\|rn3\|chr3 (92679644-92678790)
	1-325, gnl\|tetNig1\|chr5 (11140107-11140901)
	1-325, gnl\|xenTro1\|scaffold_331 (186212-185304)