Non-Coding RNA Search

Pig2-49O17

Sequence:


               
               TAAATAGTTAAAAAATAAAATAAAAACTAATGAGGAAAATATGTGGGTTTATGCATTAAT
AAGCATTCTGGACAGTAAAACACTAGGACATGCTAAAACCTCATTCCAGTGTTGGCTACT
TAAAAACGAGGTTTGCTGCAATCTCTAATCCAATTGTTGGAGTCAGTCTTCTTGCTTGAT
TACTTGATAACTAGTTTCAGTGCTATTATCATCTTCATGATTGTATATTTTCTCCAGTGG
ACACCCTGCATCTCCCCTTCTTTTTCGTTGTGTGTGGGAATAATGTTCTCTGCTATGGCC
AGCGATGTGCTCTTTTGGTTACTTTTTCTTCTGTTTCCTCTACAGGCTTGAGTTGTATAG
GAAAGTACCAAATCTGCGAATTCTGGCCTGTGGTGGGGATGGAACGGTAGGTCCTTGAAA
TAGAATCTGGTTCCCTCCCTTGTCTCCTCCATCTGTCTTTTGTTTTCCTTCGGACAGTTC
ACTTTCTTCAATCCCACCTCACAATCTTTCCAGTTTCCTAAAACATATGTCGCTTATGGG
AATCCACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATAGTTAAAAAATAAAATAAAAACTAATGAGGAAAATATGTGGGTTTATGCATTAAT
AAGCATTCTGGACAGTAAAACACTAGGACATGCTAAAACCTCATTCCAGTGTTGGCTACT
TAAAAACGAGGTTTGCTGCAATCTCTAATCCAATTGTTGGAGTCAGTCTTCTTGCTTGAT
TACTTGATAACTAGTTTCAGTGCTATTATCATCTTCATGATTGTATATTTTCTCCAGTGG
ACACCCTGCATCTCCCCTTCTTTTTCGTTGTGTGTGGGAATAATGTTCTCTGCTATGGCC
AGCGATGTGCTCTTTTGGTTACTTTTTCTTCTGTTTCCTCTACAGGCTTGAGTTGTATAG
GAAAGTACCAAATCTGCGAATTCTGGCCTGTGGTGGGGATGGAACGGTAGGTCCTTGAAA
TAGAATCTGGTTCCCTCCCTTGTCTCCTCCATCTGTCTTTTGTTTTCCTTCGGACAGTTC
ACTTTCTTCAATCCCACCTCACAATCTTTCCAGTTTCCTAAAACATATGTCGCTTATGGG
AATCCACACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               307-426, + strand, RNAz p=0.992904

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-426, + strand, RNAz p=0.992904

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               327-450, + strand, RNAmicro p=0.999795

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               327-450, + strand, RNAmicro p=0.999795

Similar Transcript(s): 2 entry(ies)

More info

Similar Transcript(s): 2 entry(ies)

Help | Less info


               
               346-408, ah36d03.s1 Soares_testis_NHT Homo sapiens cDNA clone 1276613 3' 
(gb|AA707274.1|), blast E-value=9e-24, identity=98.41% 
               

               
               346-408, UI-H-ED1-axu-l-09-0-UI.s1 NCI_CGAP_ED1 Homo sapiens cDNA clone 
(gb|BQ014815.1|), blast E-value=9e-24, identity=98.41%

Similar Transcript(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               346-408, ah36d03.s1 Soares_testis_NHT Homo sapiens cDNA clone 1276613 3' 
(gb|AA707274.1|), blast E-value=9e-24, identity=98.41% 
               

               
               346-408, UI-H-ED1-axu-l-09-0-UI.s1 NCI_CGAP_ED1 Homo sapiens cDNA clone 
(gb|BQ014815.1|), blast E-value=9e-24, identity=98.41%

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               11-522, gnl|bosTau2|chr4 (54717343-54717861)
               

               
               11-522, gnl|Hg17|chr7 (136740232-136739744)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-522, gnl|bosTau2|chr4 (54717343-54717861)
               

               
               11-522, gnl|Hg17|chr7 (136740232-136739744)

	346-408, ah36d03.s1 Soares_testis_NHT Homo sapiens cDNA clone 1276613 3' (gb\|AA707274.1\|), blast E-value=9e-24, identity=98.41%
	346-408, UI-H-ED1-axu-l-09-0-UI.s1 NCI_CGAP_ED1 Homo sapiens cDNA clone (gb\|BQ014815.1\|), blast E-value=9e-24, identity=98.41%

	11-522, gnl\|bosTau2\|chr4 (54717343-54717861)
	11-522, gnl\|Hg17\|chr7 (136740232-136739744)