Pig2-4B02
|
TCGTTCGGGGCGGGGTTCAGCTCAGTCTACTCCCACCTTTCAGGGAGGATGTCGAGGGCG
ATAGGGTAGGAGGGCGAGGCTTTAGTGCTCATGGCATTATAGAGGCAGCACACCACTGTG
AAGCCACGAGCTGAGAAATAGGGTGCCTGATTTGCTTGAGACCTGACTCTGCTTCCCCAT
TTGCCTTCACACCTTCCTTACACCATTCATTCATTTGTCTTCATTCATTCACTCAGCCAC
TCAACAGATATTTATTGACAACCTGTTACAAGCTTTAAGCCCCCACCCCCACCCCACTTT
GTCCTGACATGTCTGTGCCCACTTTCTCTCTGATTCATCACTCTGTTTCCAAATCACTCA
AAACCTTGAGCCTGGGAATTGGATCAGGGTCACCTGTGTTTTTTATTGCGGACTGGAGTT
TTAGAGCCCTGAGCCACCCTGTGGGTTAGCTGGGGCAGGCCTCTCAGTTCACAGCTGACA
AAACTGTGGTGACCCACAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGTTCGGGGCGGGGTTCAGCTCAGTCTACTCCCACCTTTCAGGGAGGATGTCGAGGGCG
ATAGGGTAGGAGGGCGAGGCTTTAGTGCTCATGGCATTATAGAGGCAGCACACCACTGTG
AAGCCACGAGCTGAGAAATAGGGTGCCTGATTTGCTTGAGACCTGACTCTGCTTCCCCAT
TTGCCTTCACACCTTCCTTACACCATTCATTCATTTGTCTTCATTCATTCACTCAGCCAC
TCAACAGATATTTATTGACAACCTGTTACAAGCTTTAAGCCCCCACCCCCACCCCACTTT
GTCCTGACATGTCTGTGCCCACTTTCTCTCTGATTCATCACTCTGTTTCCAAATCACTCA
AAACCTTGAGCCTGGGAATTGGATCAGGGTCACCTGTGTTTTTTATTGCGGACTGGAGTT
TTAGAGCCCTGAGCCACCCTGTGGGTTAGCTGGGGCAGGCCTCTCAGTTCACAGCTGACA
AAACTGTGGTGACCCACAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
387-504, - strand, RNAmicro p=0.998168 |
|
336-414, + strand, RNAmicro p=0.902514 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
387-504, - strand, RNAmicro p=0.998168 |
|
336-414, + strand, RNAmicro p=0.902514 |
|
300-499, BovGen_09083 normal cattle brain Bos taurus cDNA clone
(gb|CO880758.1|), blast E-value=0, identity=100% |
|
300-499, BovGen_21443 normal cattle brain Bos taurus cDNA clone
(gb|CO893118.1|), blast E-value=0, identity=100% |
|
300-499, LB02611.CR_B16 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879785.1|),
blast E-value=0, identity=100% |
|
300-499, LB02612.CR_E02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV880150.1|),
blast E-value=0, identity=100% |
|
300-499, LB02626.CR_J23 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV883207.1|),
blast E-value=0, identity=100% |
|
300-499, LB02623.CR_O14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV887079.1|),
blast E-value=0, identity=100% |
|
383-499, LB0259.CR_A22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV877524.1|),
blast E-value=0, identity=100% |
|
383-499, LB02611.CR_B16 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879785.1|),
blast E-value=0, identity=100% |
|
383-499, LB02612.CR_E02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV880150.1|),
blast E-value=0, identity=100% |
|
383-499, LB02626.CR_J23 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV883207.1|),
blast E-value=0, identity=100% |
|
383-499, LB02623.CR_O14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV887079.1|),
blast E-value=0, identity=100% |
|
383-499, LB02534.CR_G20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340704.1|),
blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
300-499, BovGen_09083 normal cattle brain Bos taurus cDNA clone
(gb|CO880758.1|), blast E-value=0, identity=100% |
|
300-499, BovGen_21443 normal cattle brain Bos taurus cDNA clone
(gb|CO893118.1|), blast E-value=0, identity=100% |
|
300-499, LB02611.CR_B16 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879785.1|),
blast E-value=0, identity=100% |
|
300-499, LB02612.CR_E02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV880150.1|),
blast E-value=0, identity=100% |
|
300-499, LB02626.CR_J23 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV883207.1|),
blast E-value=0, identity=100% |
|
300-499, LB02623.CR_O14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV887079.1|),
blast E-value=0, identity=100% |
|
383-499, LB0259.CR_A22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV877524.1|),
blast E-value=0, identity=100% |
|
383-499, LB02611.CR_B16 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879785.1|),
blast E-value=0, identity=100% |
|
383-499, LB02612.CR_E02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV880150.1|),
blast E-value=0, identity=100% |
|
383-499, LB02626.CR_J23 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV883207.1|),
blast E-value=0, identity=100% |
|
383-499, LB02623.CR_O14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV887079.1|),
blast E-value=0, identity=100% |
|
383-499, LB02534.CR_G20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340704.1|),
blast E-value=0, identity=100% |
|
7-499, gnl|bosTau2|chr11 (81731532-81732023) |
|
7-499, gnl|canFam2|chr9 (56292614-56292026) |
|
7-499, gnl|dasNov1|scaffold_244701 (16-600) |
|
7-499, gnl|echTel1|scaffold_277172 (3834-4349) |
|
7-499, gnl|hg17|chr9 (131025769-131026363) |
|
7-499, gnl|Hg17|chr9 (131026015-131026485) |
|
7-499, gnl|mm7|chr2 (31978735-31979223) |
|
7-499, gnl|panTro1|chr11 (115902813-115903408) |
|
7-499, gnl|rheMac2|chr15 (7631852-7631265) |
|
7-499, gnl|rn3|chr3 (10972420-10972895) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
7-499, gnl|bosTau2|chr11 (81731532-81732023) |
|
7-499, gnl|canFam2|chr9 (56292614-56292026) |
|
7-499, gnl|dasNov1|scaffold_244701 (16-600) |
|
7-499, gnl|echTel1|scaffold_277172 (3834-4349) |
|
7-499, gnl|hg17|chr9 (131025769-131026363) |
|
7-499, gnl|Hg17|chr9 (131026015-131026485) |
|
7-499, gnl|mm7|chr2 (31978735-31979223) |
|
7-499, gnl|panTro1|chr11 (115902813-115903408) |
|
7-499, gnl|rheMac2|chr15 (7631852-7631265) |
|
7-499, gnl|rn3|chr3 (10972420-10972895) |
