Non-Coding RNA Search

Pig2-4H13

Sequence:


               
               CGGTGCTTGTTGGCGTGTAGATGCAACTTCTTCCAGCGACTTCTGGGCTCGGAGATGGGC
CCTGGGGTGCCTAGCCCCGTTGTGCTAAGCACCGTGCCAGCTGAGGCCTTCCTGGCAGTG
CTAGAGTTCCTGTACACCAACAGTGCCAAGCTGCACCGACACTCTGTGAGCCCACTGGGC
AGGGCTTGGGGCTCTGGGCGGGGTGGGGGAGTAGGAGGCAGAGGAGACTCCCTTTCACTT
CCCCAAACACCTACTGTGCAGGTGCTGGAGGTGCTGACAGCAGCTGTGGAGTATGGGCTG
GAGGAACTGCGAGAGGTGGGTCTATGTGGCTGTCCCGTCTCATTTCCCCCACCTCTTCTG
GGCTCCGTTCACACCCTGCCTCACACACCTGCTAGCGTGGAGAGGACACGCACCAGTAGA
GAGAGAAGAATGGGTATCTCTGTGTAAACAGTCATTTATGTGTGCCTGTATGCAAAAGGA
CACATGCATACCTTATGTGTGCAGCATATGGGCTGATTATGGCTGGTGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGCTTGTTGGCGTGTAGATGCAACTTCTTCCAGCGACTTCTGGGCTCGGAGATGGGC
CCTGGGGTGCCTAGCCCCGTTGTGCTAAGCACCGTGCCAGCTGAGGCCTTCCTGGCAGTG
CTAGAGTTCCTGTACACCAACAGTGCCAAGCTGCACCGACACTCTGTGAGCCCACTGGGC
AGGGCTTGGGGCTCTGGGCGGGGTGGGGGAGTAGGAGGCAGAGGAGACTCCCTTTCACTT
CCCCAAACACCTACTGTGCAGGTGCTGGAGGTGCTGACAGCAGCTGTGGAGTATGGGCTG
GAGGAACTGCGAGAGGTGGGTCTATGTGGCTGTCCCGTCTCATTTCCCCCACCTCTTCTG
GGCTCCGTTCACACCCTGCCTCACACACCTGCTAGCGTGGAGAGGACACGCACCAGTAGA
GAGAGAAGAATGGGTATCTCTGTGTAAACAGTCATTTATGTGTGCCTGTATGCAAAAGGA
CACATGCATACCTTATGTGTGCAGCATATGGGCTGATTATGGCTGGTGCTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.51931
               

               
               207-299, - strand, RNAz p=0.977977

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.51931
               

               
               207-299, - strand, RNAz p=0.977977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-480, gnl|bosTau2|chr3 (68166891-68167366)
               

               
               1-480, gnl|Hg17|chr1 (44945027-44945544)
               

               
               1-480, gnl|Mm7|chr4 (116500530-116500046)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr3 (68166891-68167366)
               

               
               1-480, gnl|Hg17|chr1 (44945027-44945544)
               

               
               1-480, gnl|Mm7|chr4 (116500530-116500046)

	40-159, - strand, RNAz p=0.51931
	207-299, - strand, RNAz p=0.977977

	1-480, gnl\|bosTau2\|chr3 (68166891-68167366)
	1-480, gnl\|Hg17\|chr1 (44945027-44945544)
	1-480, gnl\|Mm7\|chr4 (116500530-116500046)