Pig2-50M17
|
AAatcctaaacccactgagcaaggccagggattgaacccacaacctcatggttcctagtc
ggattcgcttccactgtgccaagacgggaactccATTGTAGGGGTTTTAAATAAGGGCAG
CGAACAGGGAGGGCATAGTTCTTGGTTGGCGGGAACGGCATGAGTAGGGGTTCTGGGCTC
ATTCATGCTCCTGCTGTGCTGTGTAGCCTTGGACAGGTGCTTCACCTCTGTACCTTCATT
TCCTCTTCTGTAAAACAGATCTGAAAACCTTTTCAGGGCTCGCTCTGAGCAGCTCAGAAG
AAAGACGTAGAGAATGGGAGAGGATCTCATGGTTCTGACGATGATTATCCACCAAACGCC
TGGTTCTCTCTATACTTCCTCCTCCTCCCATCTCCTTACACCCTCTGGCTTCCTGTCCTC
TCTCTTGGCTTCTCTCTTTCTGGCGCATTTTCCTGAAGCCTCTTGTTAACCCCCATCTCC
AGAAGCACCTCAGCAATGTCAGTGGCTGGGGCTGCACCCAGAGGCAGATCTGCAGGATGT
GAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAatcctaaacccactgagcaaggccagggattgaacccacaacctcatggttcctagtc
ggattcgcttccactgtgccaagacgggaactccATTGTAGGGGTTTTAAATAAGGGCAG
CGAACAGGGAGGGCATAGTTCTTGGTTGGCGGGAACGGCATGAGTAGGGGTTCTGGGCTC
ATTCATGCTCCTGCTGTGCTGTGTAGCCTTGGACAGGTGCTTCACCTCTGTACCTTCATT
TCCTCTTCTGTAAAACAGATCTGAAAACCTTTTCAGGGCTCGCTCTGAGCAGCTCAGAAG
AAAGACGTAGAGAATGGGAGAGGATCTCATGGTTCTGACGATGATTATCCACCAAACGCC
TGGTTCTCTCTATACTTCCTCCTCCTCCCATCTCCTTACACCCTCTGGCTTCCTGTCCTC
TCTCTTGGCTTCTCTCTTTCTGGCGCATTTTCCTGAAGCCTCTTGTTAACCCCCATCTCC
AGAAGCACCTCAGCAATGTCAGTGGCTGGGGCTGCACCCAGAGGCAGATCTGCAGGATGT
GAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
100-543, gnl|bosTau2|chr2 (74131452-74131012) |
|
100-543, gnl|canFam2|chr2 (71382197-71381566) |
|
100-543, gnl|dasNov1|scaffold_17053 (7755-8404) |
|
100-543, gnl|echTel1|scaffold_320492 (887-312) |
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100-543, gnl|hg17|chr1 (32998562-32999163) |
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100-543, gnl|Hg17|chr1 (32999161-32998728) |
|
100-543, gnl|loxAfr1|scaffold_9802 (11132-11774) |
|
100-543, gnl|mm7|chr4 (128587657-128587052) |
|
100-543, gnl|Mm7|chr4 (128587037-128587459) |
|
100-543, gnl|monDom2|scaffold_43 (6855671-6854932) |
|
100-543, gnl|oryCun1|scaffold_108036 (13477-14131) |
|
100-543, gnl|panTro1|chr1 (33742346-33742943) |
|
100-543, gnl|rheMac2|chr1 (35650537-35651146) |
|
100-543, gnl|rn3|chr5 (148313343-148312755) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
100-543, gnl|bosTau2|chr2 (74131452-74131012) |
|
100-543, gnl|canFam2|chr2 (71382197-71381566) |
|
100-543, gnl|dasNov1|scaffold_17053 (7755-8404) |
|
100-543, gnl|echTel1|scaffold_320492 (887-312) |
|
100-543, gnl|hg17|chr1 (32998562-32999163) |
|
100-543, gnl|Hg17|chr1 (32999161-32998728) |
|
100-543, gnl|loxAfr1|scaffold_9802 (11132-11774) |
|
100-543, gnl|mm7|chr4 (128587657-128587052) |
|
100-543, gnl|Mm7|chr4 (128587037-128587459) |
|
100-543, gnl|monDom2|scaffold_43 (6855671-6854932) |
|
100-543, gnl|oryCun1|scaffold_108036 (13477-14131) |
|
100-543, gnl|panTro1|chr1 (33742346-33742943) |
|
100-543, gnl|rheMac2|chr1 (35650537-35651146) |
|
100-543, gnl|rn3|chr5 (148313343-148312755) |
