Non-Coding RNA Search

Pig2-51E15

Sequence:


               
               GCCTGCCTCCCCGGGCGCAGCCTCAAGTCCACGCCCATGCTTCTCGCCGCCTCTGAGCGC
CCCTTCCCAACCCCAGGCCTCCCTCCCCTGCTCCCTCTCCCCACACCACCTCCCTTAGAG
CCTCCCGGCTCCCTCGCTGAAGAATCTGATGCGCCTGGCTTCCCAAGAGTCTGCGCCTTG
GAAGGGGGGGGGGGCCCAAAGGAAGGGGCCACAGGTCTTTGACCCCCCCCAAGCCAGGAC
CACCGCTGAACTATCCAAGGGGCCCCAGACCCCTCATTCCCACTGGACTCACCTACCCCT
GAGGGCTGGGCCAGGAAGGCCACAGTACTGATGCCAAACCAGGCCTCCACTGCTCACCCT
GCCCGGAGGCTCCCTTTGGGGGGAAAACCTAGGCCTTGCCCCAGCAGGACTCCTCTAGCC
TGGCCCTTCTGCCCCATCCAGGACCAAACCTGGATTCTCTAGGAATAATGAAGGAAATTG
AGATGGGCACTTTGAGGCCCGTGCATTCCAGCTTAAGTCCTGGCAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGCCTCCCCGGGCGCAGCCTCAAGTCCACGCCCATGCTTCTCGCCGCCTCTGAGCGC
CCCTTCCCAACCCCAGGCCTCCCTCCCCTGCTCCCTCTCCCCACACCACCTCCCTTAGAG
CCTCCCGGCTCCCTCGCTGAAGAATCTGATGCGCCTGGCTTCCCAAGAGTCTGCGCCTTG
GAAGGGGGGGGGGGCCCAAAGGAAGGGGCCACAGGTCTTTGACCCCCCCCAAGCCAGGAC
CACCGCTGAACTATCCAAGGGGCCCCAGACCCCTCATTCCCACTGGACTCACCTACCCCT
GAGGGCTGGGCCAGGAAGGCCACAGTACTGATGCCAAACCAGGCCTCCACTGCTCACCCT
GCCCGGAGGCTCCCTTTGGGGGGAAAACCTAGGCCTTGCCCCAGCAGGACTCCTCTAGCC
TGGCCCTTCTGCCCCATCCAGGACCAAACCTGGATTCTCTAGGAATAATGAAGGAAATTG
AGATGGGCACTTTGAGGCCCGTGCATTCCAGCTTAAGTCCTGGCAGGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               283-400, - strand, RNAz p=0.722343
               

               
               355-456, - strand, RNAz p=0.771216

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-400, - strand, RNAz p=0.722343
               

               
               355-456, - strand, RNAz p=0.771216

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF040709, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF040709, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-529, gnl|bosTau2|chr22 (38638460-38637927)
               

               
               1-529, gnl|canFam2|chr20 (41993937-41993354)
               

               
               1-529, gnl|dasNov1|scaffold_163990 (880-336)
               

               
               1-529, gnl|hg17|chr3 (50376434-50376998)
               

               
               1-529, gnl|Hg17|chr3 (50377156-50376624)
               

               
               1-529, gnl|mm7|chr9 (107257528-107257014)
               

               
               1-529, gnl|Mm7|chr9 (107256854-107257356)
               

               
               1-529, gnl|monDom2|scaffold_5 (73901128-73900558)
               

               
               1-529, gnl|oryCun1|scaffold_208515 (28361-27862)
               

               
               1-529, gnl|panTro1|chr2 (51955653-51956217)
               

               
               1-529, gnl|rheMac2|chr2 (86050702-86050139)
               

               
               1-529, gnl|rn3|chr8 (112795527-112795002)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-529, gnl|bosTau2|chr22 (38638460-38637927)
               

               
               1-529, gnl|canFam2|chr20 (41993937-41993354)
               

               
               1-529, gnl|dasNov1|scaffold_163990 (880-336)
               

               
               1-529, gnl|hg17|chr3 (50376434-50376998)
               

               
               1-529, gnl|Hg17|chr3 (50377156-50376624)
               

               
               1-529, gnl|mm7|chr9 (107257528-107257014)
               

               
               1-529, gnl|Mm7|chr9 (107256854-107257356)
               

               
               1-529, gnl|monDom2|scaffold_5 (73901128-73900558)
               

               
               1-529, gnl|oryCun1|scaffold_208515 (28361-27862)
               

               
               1-529, gnl|panTro1|chr2 (51955653-51956217)
               

               
               1-529, gnl|rheMac2|chr2 (86050702-86050139)
               

               
               1-529, gnl|rn3|chr8 (112795527-112795002)

	283-400, - strand, RNAz p=0.722343
	355-456, - strand, RNAz p=0.771216

	1-529, gnl\|bosTau2\|chr22 (38638460-38637927)
	1-529, gnl\|canFam2\|chr20 (41993937-41993354)
	1-529, gnl\|dasNov1\|scaffold_163990 (880-336)
	1-529, gnl\|hg17\|chr3 (50376434-50376998)
	1-529, gnl\|Hg17\|chr3 (50377156-50376624)
	1-529, gnl\|mm7\|chr9 (107257528-107257014)
	1-529, gnl\|Mm7\|chr9 (107256854-107257356)
	1-529, gnl\|monDom2\|scaffold_5 (73901128-73900558)
	1-529, gnl\|oryCun1\|scaffold_208515 (28361-27862)
	1-529, gnl\|panTro1\|chr2 (51955653-51956217)
	1-529, gnl\|rheMac2\|chr2 (86050702-86050139)
	1-529, gnl\|rn3\|chr8 (112795527-112795002)