Non-Coding RNA Search

Pig2-52H08

Sequence:


               
               TGGGGACTTCTCGTGCCTGCTGGCTGTGGCCCAAACTGTTTCCTCAGGCCTCCTGATGTC
ACAGAGCCTGTCTGAGGGGTGCCCACCGAGACCATGTGTGAGGGGACGTCTTCTCCCGCT
TTGAACAGTGCTTCCTGGGGGGGGGGTGCTTTATTCCCTGTAGCCTCTTAACTTCAGTCT
TTTGGAACCTCTCCCAATAACCTCAGAGATGGGCAGTGGTGCTCAGAAGATAGACGCTCT
TATGTGGGAAGAGGGAAATGTAAGTAAATATTATCTCTCCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGACTTCTCGTGCCTGCTGGCTGTGGCCCAAACTGTTTCCTCAGGCCTCCTGATGTC
ACAGAGCCTGTCTGAGGGGTGCCCACCGAGACCATGTGTGAGGGGACGTCTTCTCCCGCT
TTGAACAGTGCTTCCTGGGGGGGGGGTGCTTTATTCCCTGTAGCCTCTTAACTTCAGTCT
TTTGGAACCTCTCCCAATAACCTCAGAGATGGGCAGTGGTGCTCAGAAGATAGACGCTCT
TATGTGGGAAGAGGGAAATGTAAGTAAATATTATCTCTCCAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-265, - strand, RNAz p=0.600589

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-265, - strand, RNAz p=0.600589

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005829, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005829, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-282, gnl|bosTau2|chr21 (15359277-15359558)
               

               
               1-282, gnl|canFam2|chr3 (55666830-55667312)
               

               
               1-282, gnl|dasNov1|scaffold_158244 (7530-7034)
               

               
               1-282, gnl|echTel1|scaffold_301926 (657-1157)
               

               
               1-282, gnl|hg17|chr15 (88177890-88178358)
               

               
               1-282, gnl|Hg17|chr15 (88178188-88177926)
               

               
               1-282, gnl|mm7|chr7 (75746811-75747145)
               

               
               1-282, gnl|oryCun1|scaffold_114581 (4545-4241)
               

               
               1-282, gnl|panTro1|chr16 (89107807-89108275)
               

               
               1-282, gnl|rheMac2|chr7 (69464413-69464881)
               

               
               1-282, gnl|rn3|chr1 (135731032-135731367)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-282, gnl|bosTau2|chr21 (15359277-15359558)
               

               
               1-282, gnl|canFam2|chr3 (55666830-55667312)
               

               
               1-282, gnl|dasNov1|scaffold_158244 (7530-7034)
               

               
               1-282, gnl|echTel1|scaffold_301926 (657-1157)
               

               
               1-282, gnl|hg17|chr15 (88177890-88178358)
               

               
               1-282, gnl|Hg17|chr15 (88178188-88177926)
               

               
               1-282, gnl|mm7|chr7 (75746811-75747145)
               

               
               1-282, gnl|oryCun1|scaffold_114581 (4545-4241)
               

               
               1-282, gnl|panTro1|chr16 (89107807-89108275)
               

               
               1-282, gnl|rheMac2|chr7 (69464413-69464881)
               

               
               1-282, gnl|rn3|chr1 (135731032-135731367)

	1-282, gnl\|bosTau2\|chr21 (15359277-15359558)
	1-282, gnl\|canFam2\|chr3 (55666830-55667312)
	1-282, gnl\|dasNov1\|scaffold_158244 (7530-7034)
	1-282, gnl\|echTel1\|scaffold_301926 (657-1157)
	1-282, gnl\|hg17\|chr15 (88177890-88178358)
	1-282, gnl\|Hg17\|chr15 (88178188-88177926)
	1-282, gnl\|mm7\|chr7 (75746811-75747145)
	1-282, gnl\|oryCun1\|scaffold_114581 (4545-4241)
	1-282, gnl\|panTro1\|chr16 (89107807-89108275)
	1-282, gnl\|rheMac2\|chr7 (69464413-69464881)
	1-282, gnl\|rn3\|chr1 (135731032-135731367)