Non-Coding RNA Search

Pig2-55D13

Sequence:


               
               GCGGTTCCAGAGGAGCCTGCCACCTGTACCCAGCCCGGCAGGTCAGGCCCCAGCCAGTGA
AGTGGTGGAGGTTGAGGACAGTGACGATGAGCAGGAGGTGGCCTCCCGGCAGGTGAACAG
CAGCCCCCTGCTGGAGTGCGACCCCCCAATGCCAGCGGATGAGTGGTGTTGGCACGTCGA
GCCCCTGTCCCCAATTCCGATTGACCACCTGAACCTCGAGCGGACCGGCCCGCTGAGCAC
CAGCAGCCCCAGCAGTCAGGCAAGGGGGGCCCCGGACAGCCGTGGCTGCCACTCTCTGGC
TGCACCGATGGCTACCACCCCGCTCCGCACTGGCCGAAGGAAGTCTCATGAGAAGTCCCC
TGGGGCCGGCTCCCCTGGGGGCAGCAGGCTGAGCTTTCTGAATTCAGCTCTGTGGGACGA
CTGGGACGGAGAAGAACAGAAGTCCCCACAGGGCCTTCCTCTGGCCCAGCCGCCGCCCAG
CAAGTCGTGGGAGTTGCAGACGCCAAAAGGTGCTAATCGGAAGAACTTGCCCCCGAAAGT
GCCCATAACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTTCCAGAGGAGCCTGCCACCTGTACCCAGCCCGGCAGGTCAGGCCCCAGCCAGTGA
AGTGGTGGAGGTTGAGGACAGTGACGATGAGCAGGAGGTGGCCTCCCGGCAGGTGAACAG
CAGCCCCCTGCTGGAGTGCGACCCCCCAATGCCAGCGGATGAGTGGTGTTGGCACGTCGA
GCCCCTGTCCCCAATTCCGATTGACCACCTGAACCTCGAGCGGACCGGCCCGCTGAGCAC
CAGCAGCCCCAGCAGTCAGGCAAGGGGGGCCCCGGACAGCCGTGGCTGCCACTCTCTGGC
TGCACCGATGGCTACCACCCCGCTCCGCACTGGCCGAAGGAAGTCTCATGAGAAGTCCCC
TGGGGCCGGCTCCCCTGGGGGCAGCAGGCTGAGCTTTCTGAATTCAGCTCTGTGGGACGA
CTGGGACGGAGAAGAACAGAAGTCCCCACAGGGCCTTCCTCTGGCCCAGCCGCCGCCCAG
CAAGTCGTGGGAGTTGCAGACGCCAAAAGGTGCTAATCGGAAGAACTTGCCCCCGAAAGT
GCCCATAACCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               321-431, + strand, RNAz p=0.627521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-431, + strand, RNAz p=0.627521

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-479, gnl|bosTau2|chr25 (550199-549715)
               

               
               1-479, gnl|Hg17|chr16 (3579527-3579043)
               

               
               1-479, gnl|Mm7|chr16 (3657037-3656592)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr25 (550199-549715)
               

               
               1-479, gnl|Hg17|chr16 (3579527-3579043)
               

               
               1-479, gnl|Mm7|chr16 (3657037-3656592)

	1-479, gnl\|bosTau2\|chr25 (550199-549715)
	1-479, gnl\|Hg17\|chr16 (3579527-3579043)
	1-479, gnl\|Mm7\|chr16 (3657037-3656592)