Non-Coding RNA Search

Pig2-55F11

Sequence:


               
               GAGATAGTTCCACTTGGGCAGAATTCCAGGGCACAATTCCCAATAGGATTCTACTGCAGA
ATCTTCTCATGGATATGGCAGAAGCCCCCAGGGCTGAACATGCAGTCCAAGCTGCAAGAA
TGTCTGAGCTTTGTCAGGCATCCATCTTATTCTTCATATTGAAGAGAGGAAACATGGGCC
CAAGTCTTATATTCATCTTGCAATTCCATGACCTTGGGCTTGATGGGCAAGAAATTACAA
GGAGCCTTGTCCCTCCCTCTCCAAAACCCTGCAGATACACAGTGAAGCTAATATATATAT
TGCTTCCTTTGCATCATCTACAAGTTAAGAGCCTCTCCTCGCTCCTGCCTCCAGAAGCTG
GTGCCAGAGATTTCTTCATTTCTCTCCCGGATGACCTTCATTTGTTCCTCAGCAGCATTT
ACAATAAGAGTTCTGACCCTACGCTGGAGGCAGACTCTTTCATGCATAAACCTGCATGTT
GCCGCGTGGTGGCTCATACATGTGTGTCCCAAGTCCCCGCTGACCTCCTCCAGCACCCCC
GGGAGTAGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATAGTTCCACTTGGGCAGAATTCCAGGGCACAATTCCCAATAGGATTCTACTGCAGA
ATCTTCTCATGGATATGGCAGAAGCCCCCAGGGCTGAACATGCAGTCCAAGCTGCAAGAA
TGTCTGAGCTTTGTCAGGCATCCATCTTATTCTTCATATTGAAGAGAGGAAACATGGGCC
CAAGTCTTATATTCATCTTGCAATTCCATGACCTTGGGCTTGATGGGCAAGAAATTACAA
GGAGCCTTGTCCCTCCCTCTCCAAAACCCTGCAGATACACAGTGAAGCTAATATATATAT
TGCTTCCTTTGCATCATCTACAAGTTAAGAGCCTCTCCTCGCTCCTGCCTCCAGAAGCTG
GTGCCAGAGATTTCTTCATTTCTCTCCCGGATGACCTTCATTTGTTCCTCAGCAGCATTT
ACAATAAGAGTTCTGACCCTACGCTGGAGGCAGACTCTTTCATGCATAAACCTGCATGTT
GCCGCGTGGTGGCTCATACATGTGTGTCCCAAGTCCCCGCTGACCTCCTCCAGCACCCCC
GGGAGTAGGGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               41-197, - strand, RNAz p=0.907242
               

               
               236-352, - strand, RNAz p=0.60509
               

               
               433-551, - strand, RNAz p=0.882929

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-197, - strand, RNAz p=0.907242
               

               
               236-352, - strand, RNAz p=0.60509
               

               
               433-551, - strand, RNAz p=0.882929

Homologous human UTR: 3 entry(ies)

More info

Homologous human UTR: 3 entry(ies)

Help | Less info


               
               5' of AF308601, -
               

               
               5' of AF308601, -
               

               
               5' of AF308601, -

Homologous human UTR: 3 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF308601, -
               

               
               5' of AF308601, -
               

               
               5' of AF308601, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-551, gnl|bosTau2|chr3 (18491754-18491208)
               

               
               1-551, gnl|Hg17|chr1 (120169542-120170062)
               

               
               1-551, gnl|Mm7|chr3 (98019076-98018577)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-551, gnl|bosTau2|chr3 (18491754-18491208)
               

               
               1-551, gnl|Hg17|chr1 (120169542-120170062)
               

               
               1-551, gnl|Mm7|chr3 (98019076-98018577)

	41-197, - strand, RNAz p=0.907242
	236-352, - strand, RNAz p=0.60509
	433-551, - strand, RNAz p=0.882929

	1-551, gnl\|bosTau2\|chr3 (18491754-18491208)
	1-551, gnl\|Hg17\|chr1 (120169542-120170062)
	1-551, gnl\|Mm7\|chr3 (98019076-98018577)