Pig2-57B02
|
GGCAGCAAGAGCCCCTGCATGTTGGTGGCTCTGCGGCCAACCAACATGGACCGTGAGCGG
GACAAGTTCTTCCAATCCCATTATACCTACAACCCACAGTTCGAGTACCAGGAGCCCATG
CCTACAGCTGTGCTGGAGAAGTACTGTGAGGCCTCCGGACAGGTCATCCATCAAGCAGCT
GGCATCATTGATGCTGTCTTGGAGAAGTTTGGTACCTATGAACACTTCGAGGCTGCAACT
GGGGGGCAGCTGCTGACCAAGTGCCAGATCTGGTCCATTGCGCGCAAATACATGCATAAT
GAGGGCTGCGTTGGGGAGGTTGTGGAGCAGCTGAGTGAACACCTGCTGTCCCAGGCAGTG
ATGATGGTGGAGAACAGCCGACCAACACTGGCCATGAACCTGACTGGAGCCCGCCAGTAT
TGGCTGGAGGGCATGCTACGACACGAGATAGGAACTCATTACCTTCGGGGCGTGAACAAC
GCCCACCAACCTTGGCACACCGCCGAGGGCCGGCTGCAGTACAGGCTGCGGCCCGCGAAC
CCCACC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCAGCAAGAGCCCCTGCATGTTGGTGGCTCTGCGGCCAACCAACATGGACCGTGAGCGG
GACAAGTTCTTCCAATCCCATTATACCTACAACCCACAGTTCGAGTACCAGGAGCCCATG
CCTACAGCTGTGCTGGAGAAGTACTGTGAGGCCTCCGGACAGGTCATCCATCAAGCAGCT
GGCATCATTGATGCTGTCTTGGAGAAGTTTGGTACCTATGAACACTTCGAGGCTGCAACT
GGGGGGCAGCTGCTGACCAAGTGCCAGATCTGGTCCATTGCGCGCAAATACATGCATAAT
GAGGGCTGCGTTGGGGAGGTTGTGGAGCAGCTGAGTGAACACCTGCTGTCCCAGGCAGTG
ATGATGGTGGAGAACAGCCGACCAACACTGGCCATGAACCTGACTGGAGCCCGCCAGTAT
TGGCTGGAGGGCATGCTACGACACGAGATAGGAACTCATTACCTTCGGGGCGTGAACAAC
GCCCACCAACCTTGGCACACCGCCGAGGGCCGGCTGCAGTACAGGCTGCGGCCCGCGAAC
CCCACC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-122, DA496481 FCBBF3 Homo sapiens cDNA clone FCBBF3009328 5', mRNA
(dbj|DA496481.1|), blast E-value=0, identity=95% |
|
3-122, DA506207 FCBBF3 Homo sapiens cDNA clone FCBBF3021917 5', mRNA
(dbj|DA506207.1|), blast E-value=0, identity=95% |
|
3-122, DA735653 NT2RP3 Homo sapiens cDNA clone NT2RP3001528 5', mRNA
(dbj|DA735653.1|), blast E-value=0, identity=95% |
|
3-122, BX424444 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|BX424444.2|), blast E-value=0, identity=95% |
|
3-122, BX442054 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|BX442054.2|), blast E-value=0, identity=95% |
|
3-122, nbj10g09.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA
(gb|EB386033.1|), blast E-value=0, identity=95% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
3-122, DA496481 FCBBF3 Homo sapiens cDNA clone FCBBF3009328 5', mRNA
(dbj|DA496481.1|), blast E-value=0, identity=95% |
|
3-122, DA506207 FCBBF3 Homo sapiens cDNA clone FCBBF3021917 5', mRNA
(dbj|DA506207.1|), blast E-value=0, identity=95% |
|
3-122, DA735653 NT2RP3 Homo sapiens cDNA clone NT2RP3001528 5', mRNA
(dbj|DA735653.1|), blast E-value=0, identity=95% |
|
3-122, BX424444 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|BX424444.2|), blast E-value=0, identity=95% |
|
3-122, BX442054 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|BX442054.2|), blast E-value=0, identity=95% |
|
3-122, nbj10g09.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA
(gb|EB386033.1|), blast E-value=0, identity=95% |
|
3-173, gnl|bosTau2|chr18 (28363995-28363825) |
|
3-173, gnl|canFam2|chr5 (85193945-85193773) |
|
3-173, gnl|danRer3|chr7 (46086608-46086445) |
|
3-173, gnl|dasNov1|scaffold_257116 (3923-3756) |
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3-173, gnl|echTel1|scaffold_318276 (45346-45174) |
|
3-173, gnl|fr1|chrUn (23874386-23874216) |
|
3-173, gnl|hg17|chr16 (65771435-65771607) |
|
3-173, gnl|Hg17|chr16 (65771616-65771446) |
|
3-173, gnl|loxAfr1|scaffold_25266 (45054-45233) |
|
3-173, gnl|mm7|chr8 (103883885-103884057) |
|
3-173, gnl|Mm7|chr8 (103884066-103883896) |
|
3-173, gnl|monDom2|scaffold_23 (19727608-19727423) |
|
3-173, gnl|oryCun1|scaffold_205681 (73897-74063) |
|
3-173, gnl|panTro1|chr17_random (1345729-1345574) |
|
3-173, gnl|rheMac2|chr20 (65480115-65480287) |
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3-173, gnl|rn3|chr19 (35104639-35104811) |
|
3-173, gnl|tetNig1|chrUn_random (6754152-6753975) |
|
3-173, gnl|xenTro1|scaffold_264 (637050-637215) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-173, gnl|bosTau2|chr18 (28363995-28363825) |
|
3-173, gnl|canFam2|chr5 (85193945-85193773) |
|
3-173, gnl|danRer3|chr7 (46086608-46086445) |
|
3-173, gnl|dasNov1|scaffold_257116 (3923-3756) |
|
3-173, gnl|echTel1|scaffold_318276 (45346-45174) |
|
3-173, gnl|fr1|chrUn (23874386-23874216) |
|
3-173, gnl|hg17|chr16 (65771435-65771607) |
|
3-173, gnl|Hg17|chr16 (65771616-65771446) |
|
3-173, gnl|loxAfr1|scaffold_25266 (45054-45233) |
|
3-173, gnl|mm7|chr8 (103883885-103884057) |
|
3-173, gnl|Mm7|chr8 (103884066-103883896) |
|
3-173, gnl|monDom2|scaffold_23 (19727608-19727423) |
|
3-173, gnl|oryCun1|scaffold_205681 (73897-74063) |
|
3-173, gnl|panTro1|chr17_random (1345729-1345574) |
|
3-173, gnl|rheMac2|chr20 (65480115-65480287) |
|
3-173, gnl|rn3|chr19 (35104639-35104811) |
|
3-173, gnl|tetNig1|chrUn_random (6754152-6753975) |
|
3-173, gnl|xenTro1|scaffold_264 (637050-637215) |
