Non-Coding RNA Search

Pig2-58D16

Sequence:


               
               AGGGCCTGGCCAGCCTGCCCGGGACAGTCAGGCCTGAGGCTGAATGGGGCCTTGTGCAGC
CAACAGAGCCACCTTTCTCCACCCCCCCAGTCCCCCTCCCCTCCTGGGGACACAGTGTGG
CCTTTATCCCAGCCTGGCCCAAAGCTCTGAATTGGGAGGGGGGTTTCCCAGTAGGGAGGC
CAGGCTCCTGGCCACCAAGCTGTCCAGCGTGATCCAGGGGCTTTTCTGGCTGATGCGCCC
TCTTGTGGCTGCTGGGTTCTGGCCCCAGGGCCCTGCAGAAGCCTTGATCCTTGAAGGGGA
GCCCCGGGCCAGCCAAGCTCCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCCTGGCCAGCCTGCCCGGGACAGTCAGGCCTGAGGCTGAATGGGGCCTTGTGCAGC
CAACAGAGCCACCTTTCTCCACCCCCCCAGTCCCCCTCCCCTCCTGGGGACACAGTGTGG
CCTTTATCCCAGCCTGGCCCAAAGCTCTGAATTGGGAGGGGGGTTTCCCAGTAGGGAGGC
CAGGCTCCTGGCCACCAAGCTGTCCAGCGTGATCCAGGGGCTTTTCTGGCTGATGCGCCC
TCTTGTGGCTGCTGGGTTCTGGCCCCAGGGCCCTGCAGAAGCCTTGATCCTTGAAGGGGA
GCCCCGGGCCAGCCAAGCTCCCAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               41-200, - strand, RNAz p=0.898895
               

               
               64-235, + strand, RNAz p=0.710163

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-200, - strand, RNAz p=0.898895
               

               
               64-235, + strand, RNAz p=0.710163

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-324, gnl|bosTau2|chr18 (558952-558631)
               

               
               2-324, gnl|canFam2|chr5 (79634925-79635509)
               

               
               2-324, gnl|hg17|chr16 (69272859-69273433)
               

               
               2-324, gnl|Hg17|chr16 (69273013-69273346)
               

               
               2-324, gnl|loxAfr1|scaffold_5282 (52341-52901)
               

               
               2-324, gnl|mm7|chr8 (109326066-109325538)
               

               
               2-324, gnl|Mm7|chr8 (109325933-109325611)
               

               
               2-324, gnl|monDom2|scaffold_63 (9280677-9280096)
               

               
               2-324, gnl|oryCun1|scaffold_194921 (756-299)
               

               
               2-324, gnl|panTro1|chr18 (63623480-63624054)
               

               
               2-324, gnl|rheMac2|chr20 (71955734-71955162)
               

               
               2-324, gnl|rn3|chr19 (40650045-40649504)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-324, gnl|bosTau2|chr18 (558952-558631)
               

               
               2-324, gnl|canFam2|chr5 (79634925-79635509)
               

               
               2-324, gnl|hg17|chr16 (69272859-69273433)
               

               
               2-324, gnl|Hg17|chr16 (69273013-69273346)
               

               
               2-324, gnl|loxAfr1|scaffold_5282 (52341-52901)
               

               
               2-324, gnl|mm7|chr8 (109326066-109325538)
               

               
               2-324, gnl|Mm7|chr8 (109325933-109325611)
               

               
               2-324, gnl|monDom2|scaffold_63 (9280677-9280096)
               

               
               2-324, gnl|oryCun1|scaffold_194921 (756-299)
               

               
               2-324, gnl|panTro1|chr18 (63623480-63624054)
               

               
               2-324, gnl|rheMac2|chr20 (71955734-71955162)
               

               
               2-324, gnl|rn3|chr19 (40650045-40649504)

	41-200, - strand, RNAz p=0.898895
	64-235, + strand, RNAz p=0.710163

	2-324, gnl\|bosTau2\|chr18 (558952-558631)
	2-324, gnl\|canFam2\|chr5 (79634925-79635509)
	2-324, gnl\|hg17\|chr16 (69272859-69273433)
	2-324, gnl\|Hg17\|chr16 (69273013-69273346)
	2-324, gnl\|loxAfr1\|scaffold_5282 (52341-52901)
	2-324, gnl\|mm7\|chr8 (109326066-109325538)
	2-324, gnl\|Mm7\|chr8 (109325933-109325611)
	2-324, gnl\|monDom2\|scaffold_63 (9280677-9280096)
	2-324, gnl\|oryCun1\|scaffold_194921 (756-299)
	2-324, gnl\|panTro1\|chr18 (63623480-63624054)
	2-324, gnl\|rheMac2\|chr20 (71955734-71955162)
	2-324, gnl\|rn3\|chr19 (40650045-40649504)