Non-Coding RNA Search

Pig2-58H23

Sequence:


               
               AAACCTCAACACCCAACCTCTTGAGAGATTATTTCTGAAGGCGTTTTAGCAGCCTTTCCA
GTGGCAACCCTGGGAAACTCAAGTCAGGCTAATGAGAATGTCACCAGACATCAGAAACAG
TGATAAATGATTGTCATTTGCACCGACCACAGCTAAAGCTGGGTCACAGAGTCAGATCTT
CCACGAACGTGAATGTGACCGCCACTCATTTTTATAGCACCCCAGTTAAAGTTCATGGGT
GGCTTTTAATGACAGTTATGGTCTGCATGCAGACATTATACAGAGTCATTATACAATGAC
TCTTGTCATGCTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCTCAACACCCAACCTCTTGAGAGATTATTTCTGAAGGCGTTTTAGCAGCCTTTCCA
GTGGCAACCCTGGGAAACTCAAGTCAGGCTAATGAGAATGTCACCAGACATCAGAAACAG
TGATAAATGATTGTCATTTGCACCGACCACAGCTAAAGCTGGGTCACAGAGTCAGATCTT
CCACGAACGTGAATGTGACCGCCACTCATTTTTATAGCACCCCAGTTAAAGTTCATGGGT
GGCTTTTAATGACAGTTATGGTCTGCATGCAGACATTATACAGAGTCATTATACAATGAC
TCTTGTCATGCTTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               213-316, - strand, RNAz p=0.996506

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-316, - strand, RNAz p=0.996506

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-316, gnl|bosTau2|chr13 (469598-469912)
               

               
               1-316, gnl|canFam2|chr24 (15752112-15751758)
               

               
               1-316, gnl|dasNov1|scaffold_204 (209349-209009)
               

               
               1-316, gnl|echTel1|scaffold_171629 (4151-3825)
               

               
               1-316, gnl|hg17|chr20 (9405478-9405819)
               

               
               1-316, gnl|Hg17|chr20 (9405566-9405863)
               

               
               1-316, gnl|loxAfr1|scaffold_5658 (4111-3753)
               

               
               1-316, gnl|mm7|chr2 (135751906-135752152)
               

               
               1-316, gnl|monDom2|scaffold_1 (41394482-41394803)
               

               
               1-316, gnl|oryCun1|scaffold_198547 (139509-139168)
               

               
               1-316, gnl|panTro1|chr21 (9295541-9295882)
               

               
               1-316, gnl|rheMac2|chr10 (42787445-42787786)
               

               
               1-316, gnl|rn3|chr3 (123979512-123979758)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-316, gnl|bosTau2|chr13 (469598-469912)
               

               
               1-316, gnl|canFam2|chr24 (15752112-15751758)
               

               
               1-316, gnl|dasNov1|scaffold_204 (209349-209009)
               

               
               1-316, gnl|echTel1|scaffold_171629 (4151-3825)
               

               
               1-316, gnl|hg17|chr20 (9405478-9405819)
               

               
               1-316, gnl|Hg17|chr20 (9405566-9405863)
               

               
               1-316, gnl|loxAfr1|scaffold_5658 (4111-3753)
               

               
               1-316, gnl|mm7|chr2 (135751906-135752152)
               

               
               1-316, gnl|monDom2|scaffold_1 (41394482-41394803)
               

               
               1-316, gnl|oryCun1|scaffold_198547 (139509-139168)
               

               
               1-316, gnl|panTro1|chr21 (9295541-9295882)
               

               
               1-316, gnl|rheMac2|chr10 (42787445-42787786)
               

               
               1-316, gnl|rn3|chr3 (123979512-123979758)

	1-316, gnl\|bosTau2\|chr13 (469598-469912)
	1-316, gnl\|canFam2\|chr24 (15752112-15751758)
	1-316, gnl\|dasNov1\|scaffold_204 (209349-209009)
	1-316, gnl\|echTel1\|scaffold_171629 (4151-3825)
	1-316, gnl\|hg17\|chr20 (9405478-9405819)
	1-316, gnl\|Hg17\|chr20 (9405566-9405863)
	1-316, gnl\|loxAfr1\|scaffold_5658 (4111-3753)
	1-316, gnl\|mm7\|chr2 (135751906-135752152)
	1-316, gnl\|monDom2\|scaffold_1 (41394482-41394803)
	1-316, gnl\|oryCun1\|scaffold_198547 (139509-139168)
	1-316, gnl\|panTro1\|chr21 (9295541-9295882)
	1-316, gnl\|rheMac2\|chr10 (42787445-42787786)
	1-316, gnl\|rn3\|chr3 (123979512-123979758)