Non-Coding RNA Search

Pig2-58I18

Sequence:


               
               GCGGGGTGGGGTTAGGTGGCAGCTGCCAAGGGCAAGACTGAGGCAGGCAGGGATCTTGCA
CCAAGGAGGAGCGGGCTGGGTCTACGCTAAGCTCCCTTAGCAGCCTCCGGGGCCCAAAGG
CATGTGGCAAAAAGGTGGGGAGCAGGAAGAGCCAAAACCTCTCAACAGCTCCCTCAGGCC
CAGCCCCGTAGCAACCCTGCAGCGTCCATCCTCCGCACAGTCCCTTCTCCTCAAGGAGGC
GGAGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGTGGGGTTAGGTGGCAGCTGCCAAGGGCAAGACTGAGGCAGGCAGGGATCTTGCA
CCAAGGAGGAGCGGGCTGGGTCTACGCTAAGCTCCCTTAGCAGCCTCCGGGGCCCAAAGG
CATGTGGCAAAAAGGTGGGGAGCAGGAAGAGCCAAAACCTCTCAACAGCTCCCTCAGGCC
CAGCCCCGTAGCAACCCTGCAGCGTCCATCCTCCGCACAGTCCCTTCTCCTCAAGGAGGC
GGAGCGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-230, - strand, RNAz p=0.928551
               

               
               83-185, - strand, RNAz p=0.637171

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-230, - strand, RNAz p=0.928551
               

               
               83-185, - strand, RNAz p=0.637171

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC036475, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC036475, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               5-247, gnl|bosTau2|chr10 (60282924-60283160)
               

               
               5-247, gnl|canFam2|chr8 (50014760-50015409)
               

               
               5-247, gnl|dasNov1|scaffold_1591 (56896-57592)
               

               
               5-247, gnl|echTel1|scaffold_318076 (38133-37469)
               

               
               5-247, gnl|hg17|chr14 (73253855-73254507)
               

               
               5-247, gnl|Hg17|chr14 (73254341-73254583)
               

               
               5-247, gnl|loxAfr1|scaffold_1101 (81541-82204)
               

               
               5-247, gnl|mm7|chr12 (82147006-82147636)
               

               
               5-247, gnl|Mm7|chr12 (82147492-82147712)
               

               
               5-247, gnl|monDom2|scaffold_8 (61415576-61414812)
               

               
               5-247, gnl|panTro1|chr15 (73034290-73034943)
               

               
               5-247, gnl|rheMac2|chr7 (136807235-136807882)
               

               
               5-247, gnl|rn3|chr6 (108206504-108207131)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-247, gnl|bosTau2|chr10 (60282924-60283160)
               

               
               5-247, gnl|canFam2|chr8 (50014760-50015409)
               

               
               5-247, gnl|dasNov1|scaffold_1591 (56896-57592)
               

               
               5-247, gnl|echTel1|scaffold_318076 (38133-37469)
               

               
               5-247, gnl|hg17|chr14 (73253855-73254507)
               

               
               5-247, gnl|Hg17|chr14 (73254341-73254583)
               

               
               5-247, gnl|loxAfr1|scaffold_1101 (81541-82204)
               

               
               5-247, gnl|mm7|chr12 (82147006-82147636)
               

               
               5-247, gnl|Mm7|chr12 (82147492-82147712)
               

               
               5-247, gnl|monDom2|scaffold_8 (61415576-61414812)
               

               
               5-247, gnl|panTro1|chr15 (73034290-73034943)
               

               
               5-247, gnl|rheMac2|chr7 (136807235-136807882)
               

               
               5-247, gnl|rn3|chr6 (108206504-108207131)

	5-230, - strand, RNAz p=0.928551
	83-185, - strand, RNAz p=0.637171

	5-247, gnl\|bosTau2\|chr10 (60282924-60283160)
	5-247, gnl\|canFam2\|chr8 (50014760-50015409)
	5-247, gnl\|dasNov1\|scaffold_1591 (56896-57592)
	5-247, gnl\|echTel1\|scaffold_318076 (38133-37469)
	5-247, gnl\|hg17\|chr14 (73253855-73254507)
	5-247, gnl\|Hg17\|chr14 (73254341-73254583)
	5-247, gnl\|loxAfr1\|scaffold_1101 (81541-82204)
	5-247, gnl\|mm7\|chr12 (82147006-82147636)
	5-247, gnl\|Mm7\|chr12 (82147492-82147712)
	5-247, gnl\|monDom2\|scaffold_8 (61415576-61414812)
	5-247, gnl\|panTro1\|chr15 (73034290-73034943)
	5-247, gnl\|rheMac2\|chr7 (136807235-136807882)
	5-247, gnl\|rn3\|chr6 (108206504-108207131)