Non-Coding RNA Search

Pig2-58K05

Sequence:


               
               CTGTATTTTTCCAATTGGTATTTATTTTTCGGGTAAAAAGTTTATTTGCAAATAATAATT
TTACCTAATTTCCTTTTTTAATCCTAACTTCCTTTTTCAAACTTTGAAGTTTTCTTCATA
AGCCAGTTCATCTCCTTTATTATATTGTTCCTCAATGAATTTGTATGAGCTTATCTTTGC
AGTTATATATAAATTTCTGAGAAAGAAATTTCACTTCAGATATATTCTGAAGTAAAATCG
TAAAGAGAAAGACCTCAATATTAGATTACTGAGGTTAAACTTAAAATATACAAATCTACT
TCTCATCTCCTAATTAAGGGGGAAGAAATAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTATTTTTCCAATTGGTATTTATTTTTCGGGTAAAAAGTTTATTTGCAAATAATAATT
TTACCTAATTTCCTTTTTTAATCCTAACTTCCTTTTTCAAACTTTGAAGTTTTCTTCATA
AGCCAGTTCATCTCCTTTATTATATTGTTCCTCAATGAATTTGTATGAGCTTATCTTTGC
AGTTATATATAAATTTCTGAGAAAGAAATTTCACTTCAGATATATTCTGAAGTAAAATCG
TAAAGAGAAAGACCTCAATATTAGATTACTGAGGTTAAACTTAAAATATACAAATCTACT
TCTCATCTCCTAATTAAGGGGGAAGAAATAGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               162-314, - strand, RNAz p=0.999555

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-314, - strand, RNAz p=0.999555

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               3-314, gnl|bosTau2|chr7 (59513536-59513856)
               

               
               3-314, gnl|canFam2|chr3 (16872842-16872540)
               

               
               3-314, gnl|dasNov1|scaffold_86558 (6298-6620)
               

               
               3-314, gnl|hg17|chr5 (94967991-94968324)
               

               
               3-314, gnl|Hg17|chr5 (94968098-94968440)
               

               
               3-314, gnl|loxAfr1|scaffold_67546 (2349-2039)
               

               
               3-314, gnl|panTro1|chr4 (20200210-20199877)
               

               
               3-314, gnl|rheMac2|chr6 (91831693-91832025)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-314, gnl|bosTau2|chr7 (59513536-59513856)
               

               
               3-314, gnl|canFam2|chr3 (16872842-16872540)
               

               
               3-314, gnl|dasNov1|scaffold_86558 (6298-6620)
               

               
               3-314, gnl|hg17|chr5 (94967991-94968324)
               

               
               3-314, gnl|Hg17|chr5 (94968098-94968440)
               

               
               3-314, gnl|loxAfr1|scaffold_67546 (2349-2039)
               

               
               3-314, gnl|panTro1|chr4 (20200210-20199877)
               

               
               3-314, gnl|rheMac2|chr6 (91831693-91832025)

	3-314, gnl\|bosTau2\|chr7 (59513536-59513856)
	3-314, gnl\|canFam2\|chr3 (16872842-16872540)
	3-314, gnl\|dasNov1\|scaffold_86558 (6298-6620)
	3-314, gnl\|hg17\|chr5 (94967991-94968324)
	3-314, gnl\|Hg17\|chr5 (94968098-94968440)
	3-314, gnl\|loxAfr1\|scaffold_67546 (2349-2039)
	3-314, gnl\|panTro1\|chr4 (20200210-20199877)
	3-314, gnl\|rheMac2\|chr6 (91831693-91832025)