Non-Coding RNA Search

Pig2-58P16

Sequence:


               
               ACTGCCTAACACAAATCTGTGCCTTATTTTGCTCTTTTTCTGATTCCCTATAGCAGAACT
CTCTACTGTTTATAGACACTACTGACTTTTGCTGTATTTTAAAATAAGATACTGGTAAAG
AGTTTTTGCTCTTACATTAGATATGAAGATGTTTACTTTCTTGTTACTGTTATGTATCAC
TTGCTAAAAATATTGTTTTAATCAGAAATAATAACCTCTCTAAAACATTTTTATAGAACG
ATGGCTGTGACCAAAGTTTCTATCTTGCCAAAAAGTTAAATCCCAGTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCCTAACACAAATCTGTGCCTTATTTTGCTCTTTTTCTGATTCCCTATAGCAGAACT
CTCTACTGTTTATAGACACTACTGACTTTTGCTGTATTTTAAAATAAGATACTGGTAAAG
AGTTTTTGCTCTTACATTAGATATGAAGATGTTTACTTTCTTGTTACTGTTATGTATCAC
TTGCTAAAAATATTGTTTTAATCAGAAATAATAACCTCTCTAAAACATTTTTATAGAACG
ATGGCTGTGACCAAAGTTTCTATCTTGCCAAAAAGTTAAATCCCAGTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-143, + strand, RNAz p=0.713845

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-143, + strand, RNAz p=0.713845

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004781, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004781, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-290, gnl|bosTau2|chr16 (29868241-29868530)
               

               
               1-290, gnl|canFam2|chr5 (64437855-64438536)
               

               
               1-290, gnl|dasNov1|scaffold_29568 (48687-48000)
               

               
               1-290, gnl|echTel1|scaffold_291067 (10476-11106)
               

               
               1-290, gnl|hg17|chr1 (7774312-7774983)
               

               
               1-290, gnl|Hg17|chr1 (7774374-7774674)
               

               
               1-290, gnl|loxAfr1|scaffold_73153 (5113-5785)
               

               
               1-290, gnl|mm7|chr4 (150038208-150037587)
               

               
               1-290, gnl|Mm7|chr4 (150038145-150037861)
               

               
               1-290, gnl|monDom2|scaffold_78 (166819-166065)
               

               
               1-290, gnl|oryCun1|scaffold_108264 (6572-7185)
               

               
               1-290, gnl|panTro1|chr1 (7770559-7771225)
               

               
               1-290, gnl|rheMac2|chr1 (10810390-10811070)
               

               
               1-290, gnl|rn3|chr5 (168201724-168201111)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr16 (29868241-29868530)
               

               
               1-290, gnl|canFam2|chr5 (64437855-64438536)
               

               
               1-290, gnl|dasNov1|scaffold_29568 (48687-48000)
               

               
               1-290, gnl|echTel1|scaffold_291067 (10476-11106)
               

               
               1-290, gnl|hg17|chr1 (7774312-7774983)
               

               
               1-290, gnl|Hg17|chr1 (7774374-7774674)
               

               
               1-290, gnl|loxAfr1|scaffold_73153 (5113-5785)
               

               
               1-290, gnl|mm7|chr4 (150038208-150037587)
               

               
               1-290, gnl|Mm7|chr4 (150038145-150037861)
               

               
               1-290, gnl|monDom2|scaffold_78 (166819-166065)
               

               
               1-290, gnl|oryCun1|scaffold_108264 (6572-7185)
               

               
               1-290, gnl|panTro1|chr1 (7770559-7771225)
               

               
               1-290, gnl|rheMac2|chr1 (10810390-10811070)
               

               
               1-290, gnl|rn3|chr5 (168201724-168201111)

	1-290, gnl\|bosTau2\|chr16 (29868241-29868530)
	1-290, gnl\|canFam2\|chr5 (64437855-64438536)
	1-290, gnl\|dasNov1\|scaffold_29568 (48687-48000)
	1-290, gnl\|echTel1\|scaffold_291067 (10476-11106)
	1-290, gnl\|hg17\|chr1 (7774312-7774983)
	1-290, gnl\|Hg17\|chr1 (7774374-7774674)
	1-290, gnl\|loxAfr1\|scaffold_73153 (5113-5785)
	1-290, gnl\|mm7\|chr4 (150038208-150037587)
	1-290, gnl\|Mm7\|chr4 (150038145-150037861)
	1-290, gnl\|monDom2\|scaffold_78 (166819-166065)
	1-290, gnl\|oryCun1\|scaffold_108264 (6572-7185)
	1-290, gnl\|panTro1\|chr1 (7770559-7771225)
	1-290, gnl\|rheMac2\|chr1 (10810390-10811070)
	1-290, gnl\|rn3\|chr5 (168201724-168201111)