Non-Coding RNA Search

Pig2-59G03

Sequence:


               
               ATTTCAATGAAGAAAGTGAGTTCAAGGGACAATATTAAGAGGCAGTCTGCACTCCTTGGC
CAGGAGCTCTTTCCTTCCTCCATCTCCAAAGCCAAAGTCAACTAGTTTTGTGTCTAGTCA
TGTGACTTGCTTTGGCCAATGGACTGAGAGGGGCCAGTTGGAATCTAGACCTTAAAAGGT
GTTGCAGGTTTCCATCTGCCTCCTTGTGCCTCTGCACTCAACATGAGAACATTCCCCTCA
ATGAGTTTGCTGGCTCCAGACAGAAGCTCAGAGACAAGCAGAACCAGCCTGGATCAGGCA
ACCCCTGGCCCACCTGAAGACTCATGAGGGACAAAGTTCGAGGGAGAGCCACAGGGGTCA
GAAAGAACCTCAGAAGCACTGAGCAGACGCCAGATCCCTTTCTTTCCTTTGAATGGAATT
CTGTTTAGTGCCAACGCATCCCACAACACATGTGAATACAACAGACAGATGGACTACAGG
TGAAAGGTGCCTGACGCGTGATCCTACTCTCTCTTCTATATTCTTATTAATTGAGAACAT
TAAGAAAAATAAGTAAAAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCAATGAAGAAAGTGAGTTCAAGGGACAATATTAAGAGGCAGTCTGCACTCCTTGGC
CAGGAGCTCTTTCCTTCCTCCATCTCCAAAGCCAAAGTCAACTAGTTTTGTGTCTAGTCA
TGTGACTTGCTTTGGCCAATGGACTGAGAGGGGCCAGTTGGAATCTAGACCTTAAAAGGT
GTTGCAGGTTTCCATCTGCCTCCTTGTGCCTCTGCACTCAACATGAGAACATTCCCCTCA
ATGAGTTTGCTGGCTCCAGACAGAAGCTCAGAGACAAGCAGAACCAGCCTGGATCAGGCA
ACCCCTGGCCCACCTGAAGACTCATGAGGGACAAAGTTCGAGGGAGAGCCACAGGGGTCA
GAAAGAACCTCAGAAGCACTGAGCAGACGCCAGATCCCTTTCTTTCCTTTGAATGGAATT
CTGTTTAGTGCCAACGCATCCCACAACACATGTGAATACAACAGACAGATGGACTACAGG
TGAAAGGTGCCTGACGCGTGATCCTACTCTCTCTTCTATATTCTTATTAATTGAGAACAT
TAAGAAAAATAAGTAAAAATAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               171-311, - strand, RNAz p=0.724729
               

               
               197-328, - strand, RNAz p=0.977411

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-311, - strand, RNAz p=0.724729
               

               
               197-328, - strand, RNAz p=0.977411

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               119-328, gnl|bosTau2|chr9 (21073073-21072859)
               

               
               119-328, gnl|canFam2|chr20 (10799684-10799421)
               

               
               119-328, gnl|dasNov1|scaffold_48877 (1936-1681)
               

               
               119-328, gnl|hg17|chr3 (10588632-10588895)
               

               
               119-328, gnl|Hg17|chr3 (10588682-10588892)
               

               
               119-328, gnl|loxAfr1|scaffold_6391 (34321-34586)
               

               
               119-328, gnl|mm7|chr6 (114111549-114111766)
               

               
               119-328, gnl|oryCun1|scaffold_173050 (20129-19909)
               

               
               119-328, gnl|panTro1|chr2 (10986896-10987161)
               

               
               119-328, gnl|rheMac2|chr2 (50446435-50446173)
               

               
               119-328, gnl|rn3|chr4 (150121860-150122083)
               


               
               345-561, gnl|bosTau2|chr9 (21068853-21068644)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-328, gnl|bosTau2|chr9 (21073073-21072859)
               

               
               119-328, gnl|canFam2|chr20 (10799684-10799421)
               

               
               119-328, gnl|dasNov1|scaffold_48877 (1936-1681)
               

               
               119-328, gnl|hg17|chr3 (10588632-10588895)
               

               
               119-328, gnl|Hg17|chr3 (10588682-10588892)
               

               
               119-328, gnl|loxAfr1|scaffold_6391 (34321-34586)
               

               
               119-328, gnl|mm7|chr6 (114111549-114111766)
               

               
               119-328, gnl|oryCun1|scaffold_173050 (20129-19909)
               

               
               119-328, gnl|panTro1|chr2 (10986896-10987161)
               

               
               119-328, gnl|rheMac2|chr2 (50446435-50446173)
               

               
               119-328, gnl|rn3|chr4 (150121860-150122083)
               


               
               345-561, gnl|bosTau2|chr9 (21068853-21068644)

	171-311, - strand, RNAz p=0.724729
	197-328, - strand, RNAz p=0.977411

	119-328, gnl\|bosTau2\|chr9 (21073073-21072859)
	119-328, gnl\|canFam2\|chr20 (10799684-10799421)
	119-328, gnl\|dasNov1\|scaffold_48877 (1936-1681)
	119-328, gnl\|hg17\|chr3 (10588632-10588895)
	119-328, gnl\|Hg17\|chr3 (10588682-10588892)
	119-328, gnl\|loxAfr1\|scaffold_6391 (34321-34586)
	119-328, gnl\|mm7\|chr6 (114111549-114111766)
	119-328, gnl\|oryCun1\|scaffold_173050 (20129-19909)
	119-328, gnl\|panTro1\|chr2 (10986896-10987161)
	119-328, gnl\|rheMac2\|chr2 (50446435-50446173)
	119-328, gnl\|rn3\|chr4 (150121860-150122083)

	345-561, gnl\|bosTau2\|chr9 (21068853-21068644)