Non-Coding RNA Search

Pig2-5A22

Sequence:


               
               TGTGGCTGCTGCTCAGCCTCGCTGTCCCAGTGCAAGGGTCCTACTTTTCCGTCAGCTGTC
CCAGTCGCCGGCATTGCCAACGGGCCCTTCTCTCAAACAATGACATCATGCTGCACTGCA
ATACCTCTGGGGCACAGTGGCACTTCATCTTCCTGCAAAACAAGGCCATCTGGGTGTACA
ACCCCCCCGCACGTCCAACATGGAAACAATGCCTGATGGCAGCCTTCTCATCAGAAACCC
ATTGTCCTCGCAGACCGGCTTCTACAGCTGCCGGGACCANGAAGGCCGGAAGGTGGTGCA
NTACGATATCGACTTCCACGATGTCGAGACCATGCATATCACACACAAAGACCTGGGCCA
AAAGCCCCTGCAGAATGAGACCCTGAGTCTAGGTGGCAAGGAGCTCGTCTTCACCCACTG
GGAGCCCTGGCAGGACTGTAACCGCTGTGGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGCTGCTGCTCAGCCTCGCTGTCCCAGTGCAAGGGTCCTACTTTTCCGTCAGCTGTC
CCAGTCGCCGGCATTGCCAACGGGCCCTTCTCTCAAACAATGACATCATGCTGCACTGCA
ATACCTCTGGGGCACAGTGGCACTTCATCTTCCTGCAAAACAAGGCCATCTGGGTGTACA
ACCCCCCCGCACGTCCAACATGGAAACAATGCCTGATGGCAGCCTTCTCATCAGAAACCC
ATTGTCCTCGCAGACCGGCTTCTACAGCTGCCGGGACCANGAAGGCCGGAAGGTGGTGCA
NTACGATATCGACTTCCACGATGTCGAGACCATGCATATCACACACAAAGACCTGGGCCA
AAAGCCCCTGCAGAATGAGACCCTGAGTCTAGGTGGCAAGGAGCTCGTCTTCACCCACTG
GGAGCCCTGGCAGGACTGTAACCGCTGTGGGAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-454, - strand, RNAz p=0.973569

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-454, - strand, RNAz p=0.973569

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-454, gnl|bosTau2|chr18 (39833064-39833515)
               

               
               1-454, gnl|canFam2|chr1 (120271357-120270464)
               

               
               1-454, gnl|echTel1|scaffold_166417 (3279-2392)
               

               
               1-454, gnl|hg17|chr19 (40410664-40411558)
               

               
               1-454, gnl|Hg17|chr19 (40411410-40410956)
               

               
               1-454, gnl|loxAfr1|scaffold_107229 (5350-4461)
               

               
               1-454, gnl|mm7|chr7 (27922448-27921607)
               

               
               1-454, gnl|Mm7|chr7 (27921708-27922159)
               

               
               1-454, gnl|monDom2|scaffold_139 (1468406-1469261)
               

               
               1-454, gnl|oryCun1|scaffold_11868 (1787-948)
               

               
               1-454, gnl|panTro1|chr20 (36997773-36998660)
               

               
               1-454, gnl|rheMac2|chr19 (41727313-41728207)
               

               
               1-454, gnl|rn3|chr1 (86098212-86097333)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr18 (39833064-39833515)
               

               
               1-454, gnl|canFam2|chr1 (120271357-120270464)
               

               
               1-454, gnl|echTel1|scaffold_166417 (3279-2392)
               

               
               1-454, gnl|hg17|chr19 (40410664-40411558)
               

               
               1-454, gnl|Hg17|chr19 (40411410-40410956)
               

               
               1-454, gnl|loxAfr1|scaffold_107229 (5350-4461)
               

               
               1-454, gnl|mm7|chr7 (27922448-27921607)
               

               
               1-454, gnl|Mm7|chr7 (27921708-27922159)
               

               
               1-454, gnl|monDom2|scaffold_139 (1468406-1469261)
               

               
               1-454, gnl|oryCun1|scaffold_11868 (1787-948)
               

               
               1-454, gnl|panTro1|chr20 (36997773-36998660)
               

               
               1-454, gnl|rheMac2|chr19 (41727313-41728207)
               

               
               1-454, gnl|rn3|chr1 (86098212-86097333)

	1-454, gnl\|bosTau2\|chr18 (39833064-39833515)
	1-454, gnl\|canFam2\|chr1 (120271357-120270464)
	1-454, gnl\|echTel1\|scaffold_166417 (3279-2392)
	1-454, gnl\|hg17\|chr19 (40410664-40411558)
	1-454, gnl\|Hg17\|chr19 (40411410-40410956)
	1-454, gnl\|loxAfr1\|scaffold_107229 (5350-4461)
	1-454, gnl\|mm7\|chr7 (27922448-27921607)
	1-454, gnl\|Mm7\|chr7 (27921708-27922159)
	1-454, gnl\|monDom2\|scaffold_139 (1468406-1469261)
	1-454, gnl\|oryCun1\|scaffold_11868 (1787-948)
	1-454, gnl\|panTro1\|chr20 (36997773-36998660)
	1-454, gnl\|rheMac2\|chr19 (41727313-41728207)
	1-454, gnl\|rn3\|chr1 (86098212-86097333)