Non-Coding RNA Search

Pig2-5L20

Sequence:


               
               ATCGCCCCCTCCACACACCTTACCTTGGGTGGTGACTTGCACCACGTGTTGGGGGGCCGG
GAGGAGGCAGGAGATGACCACCGAGAGGGCCCAGAAGGGCATCTTCTCCGGCAGAGTGAG
CCTGCCTTAGCCCATCCTCCCTTCAGGAAGCCGGGCCCCAGTCCCCTCCCGGGCCAGCCC
CTCAGGTTCCTGTCAGATACAGCCCCACGTCCTGTCCCTGTCCCTGCCCCTGTGGGGCCC
ATCCAGACCACACAGGGGCCGGGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGCCCCCTCCACACACCTTACCTTGGGTGGTGACTTGCACCACGTGTTGGGGGGCCGG
GAGGAGGCAGGAGATGACCACCGAGAGGGCCCAGAAGGGCATCTTCTCCGGCAGAGTGAG
CCTGCCTTAGCCCATCCTCCCTTCAGGAAGCCGGGCCCCAGTCCCCTCCCGGGCCAGCCC
CTCAGGTTCCTGTCAGATACAGCCCCACGTCCTGTCCCTGTCCCTGCCCCTGTGGGGCCC
ATCCAGACCACACAGGGGCCGGGGGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               7-267, - strand, RNAz p=0.991929
               

               
               35-267, - strand, RNAz p=0.995357

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-267, - strand, RNAz p=0.991929
               

               
               35-267, - strand, RNAz p=0.995357

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005373, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005373, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               7-267, gnl|bosTau2|chr3 (67615273-67615533)
               

               
               7-267, gnl|canFam2|chr15 (19837278-19836905)
               

               
               7-267, gnl|dasNov1|scaffold_791 (57686-58049)
               

               
               7-267, gnl|echTel1|scaffold_283633 (44487-44123)
               

               
               7-267, gnl|hg17|chr1 (43472352-43472717)
               

               
               7-267, gnl|Hg17|chr1 (43472708-43472448)
               

               
               7-267, gnl|mm7|chr4 (117834172-117833808)
               

               
               7-267, gnl|Mm7|chr4 (117833815-117834075)
               

               
               7-267, gnl|monDom2|scaffold_87 (186446-186063)
               

               
               7-267, gnl|oryCun1|scaffold_84767 (1199-1558)
               

               
               7-267, gnl|panTro1|chr1 (44450944-44451309)
               

               
               7-267, gnl|rheMac2|chr1 (46244804-46245169)
               

               
               7-267, gnl|rn3|chr5 (138937478-138937114)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-267, gnl|bosTau2|chr3 (67615273-67615533)
               

               
               7-267, gnl|canFam2|chr15 (19837278-19836905)
               

               
               7-267, gnl|dasNov1|scaffold_791 (57686-58049)
               

               
               7-267, gnl|echTel1|scaffold_283633 (44487-44123)
               

               
               7-267, gnl|hg17|chr1 (43472352-43472717)
               

               
               7-267, gnl|Hg17|chr1 (43472708-43472448)
               

               
               7-267, gnl|mm7|chr4 (117834172-117833808)
               

               
               7-267, gnl|Mm7|chr4 (117833815-117834075)
               

               
               7-267, gnl|monDom2|scaffold_87 (186446-186063)
               

               
               7-267, gnl|oryCun1|scaffold_84767 (1199-1558)
               

               
               7-267, gnl|panTro1|chr1 (44450944-44451309)
               

               
               7-267, gnl|rheMac2|chr1 (46244804-46245169)
               

               
               7-267, gnl|rn3|chr5 (138937478-138937114)

	7-267, - strand, RNAz p=0.991929
	35-267, - strand, RNAz p=0.995357

	7-267, gnl\|bosTau2\|chr3 (67615273-67615533)
	7-267, gnl\|canFam2\|chr15 (19837278-19836905)
	7-267, gnl\|dasNov1\|scaffold_791 (57686-58049)
	7-267, gnl\|echTel1\|scaffold_283633 (44487-44123)
	7-267, gnl\|hg17\|chr1 (43472352-43472717)
	7-267, gnl\|Hg17\|chr1 (43472708-43472448)
	7-267, gnl\|mm7\|chr4 (117834172-117833808)
	7-267, gnl\|Mm7\|chr4 (117833815-117834075)
	7-267, gnl\|monDom2\|scaffold_87 (186446-186063)
	7-267, gnl\|oryCun1\|scaffold_84767 (1199-1558)
	7-267, gnl\|panTro1\|chr1 (44450944-44451309)
	7-267, gnl\|rheMac2\|chr1 (46244804-46245169)
	7-267, gnl\|rn3\|chr5 (138937478-138937114)