Non-Coding RNA Search

Pig2-63F21

Sequence:


               
               AGGAGATACCCAGTGAAGAAACATTTCTTTTTCCGTTTAGTGGGTCTGCATGATGCTGTG
ATGTTGAGTTGGGCATCCCGTTAGAGTAGATGATGCCACGTTGACTAAAATACACGAATA
TGTATTCTTTTAGCAGGCACCACCTGCAGACACAGTAGCTCAGCCCTCCGAACTAGGAAC
TGCTTCCATAACGGCACCTGCTAAATGCAGTCACACAGCAATACAGATGTCAGTGTTACG
TTAGAATGTGGTCTGGTGTGTTAGCCTGTTGCAGTCACAGTTGTAGTGGTGTTAGAACCA
AGTAATCCCCCACTAGGTGACTAGAGCGTGGCTCTAACCATCCCTGACCTTGGGTACCTG
AGCTAATTCCCACAATGCCCTGGCTTCCTTTCCTTGTCATGGACGCCCATCATGTATGGC
TCCTATCCCCAAACTCTAGGGGCAGCAGCGCCTCCCCCACTTCACCTCTCTCTCCCCGAC
TCCCAACACTGTTAGGACTTGGACCTCTGTTTCTCTGGTGTCCACCTCCCAGGCTGGAGC
TGTTTCCACAGAGAAATGCTACAGCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGATACCCAGTGAAGAAACATTTCTTTTTCCGTTTAGTGGGTCTGCATGATGCTGTG
ATGTTGAGTTGGGCATCCCGTTAGAGTAGATGATGCCACGTTGACTAAAATACACGAATA
TGTATTCTTTTAGCAGGCACCACCTGCAGACACAGTAGCTCAGCCCTCCGAACTAGGAAC
TGCTTCCATAACGGCACCTGCTAAATGCAGTCACACAGCAATACAGATGTCAGTGTTACG
TTAGAATGTGGTCTGGTGTGTTAGCCTGTTGCAGTCACAGTTGTAGTGGTGTTAGAACCA
AGTAATCCCCCACTAGGTGACTAGAGCGTGGCTCTAACCATCCCTGACCTTGGGTACCTG
AGCTAATTCCCACAATGCCCTGGCTTCCTTTCCTTGTCATGGACGCCCATCATGTATGGC
TCCTATCCCCAAACTCTAGGGGCAGCAGCGCCTCCCCCACTTCACCTCTCTCTCCCCGAC
TCCCAACACTGTTAGGACTTGGACCTCTGTTTCTCTGGTGTCCACCTCCCAGGCTGGAGC
TGTTTCCACAGAGAAATGCTACAGCCTCCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               38-220, - strand, RNAz p=0.993066
               

               
               62-231, - strand, RNAz p=0.988536
               

               
               460-570, - strand, RNAz p=0.802513

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-220, - strand, RNAz p=0.993066
               

               
               62-231, - strand, RNAz p=0.988536
               

               
               460-570, - strand, RNAz p=0.802513

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               120-268, - strand, RNAmicro p=0.999994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               120-268, - strand, RNAmicro p=0.999994

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-570, gnl|bosTau2|chr12 (15613513-15612944)
               

               
               1-570, gnl|canFam2|chr25 (13355706-13355119)
               

               
               1-570, gnl|dasNov1|scaffold_61259 (6619-7224)
               

               
               1-570, gnl|hg17|chr13 (28977180-28977810)
               

               
               1-570, gnl|Hg17|chr13 (28977185-28977814)
               

               
               1-570, gnl|loxAfr1|scaffold_6804 (18495-17896)
               

               
               1-570, gnl|mm7|chr5 (147209937-147210509)
               

               
               1-570, gnl|Mm7|chr5 (147209942-147210513)
               

               
               1-570, gnl|monDom2|scaffold_15 (38891999-38892583)
               

               
               1-570, gnl|oryCun1|scaffold_188944 (48079-48658)
               

               
               1-570, gnl|rheMac2|chr17 (9043917-9044556)
               

               
               1-570, gnl|rn3|chr12 (7287318-7286733)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-570, gnl|bosTau2|chr12 (15613513-15612944)
               

               
               1-570, gnl|canFam2|chr25 (13355706-13355119)
               

               
               1-570, gnl|dasNov1|scaffold_61259 (6619-7224)
               

               
               1-570, gnl|hg17|chr13 (28977180-28977810)
               

               
               1-570, gnl|Hg17|chr13 (28977185-28977814)
               

               
               1-570, gnl|loxAfr1|scaffold_6804 (18495-17896)
               

               
               1-570, gnl|mm7|chr5 (147209937-147210509)
               

               
               1-570, gnl|Mm7|chr5 (147209942-147210513)
               

               
               1-570, gnl|monDom2|scaffold_15 (38891999-38892583)
               

               
               1-570, gnl|oryCun1|scaffold_188944 (48079-48658)
               

               
               1-570, gnl|rheMac2|chr17 (9043917-9044556)
               

               
               1-570, gnl|rn3|chr12 (7287318-7286733)

	38-220, - strand, RNAz p=0.993066
	62-231, - strand, RNAz p=0.988536
	460-570, - strand, RNAz p=0.802513

	1-570, gnl\|bosTau2\|chr12 (15613513-15612944)
	1-570, gnl\|canFam2\|chr25 (13355706-13355119)
	1-570, gnl\|dasNov1\|scaffold_61259 (6619-7224)
	1-570, gnl\|hg17\|chr13 (28977180-28977810)
	1-570, gnl\|Hg17\|chr13 (28977185-28977814)
	1-570, gnl\|loxAfr1\|scaffold_6804 (18495-17896)
	1-570, gnl\|mm7\|chr5 (147209937-147210509)
	1-570, gnl\|Mm7\|chr5 (147209942-147210513)
	1-570, gnl\|monDom2\|scaffold_15 (38891999-38892583)
	1-570, gnl\|oryCun1\|scaffold_188944 (48079-48658)
	1-570, gnl\|rheMac2\|chr17 (9043917-9044556)
	1-570, gnl\|rn3\|chr12 (7287318-7286733)