Non-Coding RNA Search

Pig2-63I19

Sequence:


               
               ACGTGCATTCCGTGCATGTGTTGATGCGTACCTTCCCCTATGTGAGCAAAAGGACTCTCT
GCATCAATTGACACAGGCATGAGTTGAAGCAGGAATTGAAATCCTCATGCACAGGATTAT
AAATCATTAAGCTTCACAGATCTGATCAACAAAAGGGGCTGGAGGAGACCTCCTCTTGCT
TGATAGAATCTGATTGCGCCTGTTTCATATCCTCTTTCTAAGAGGATTTAAAATTTGGTT
TCTAACATCTGTCAGAATGATTCCCCCCCTTTCTGAAGGCATTCATTAGGAAATAAAATC
AGATATAATTAACAAACAAACAAACCTATCTGCCTGCTGTTCTGACTTGTTATAATAAGT
GTTATTTCTACTTACAAACAGTTTCCTGTCAGCATCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTGCATTCCGTGCATGTGTTGATGCGTACCTTCCCCTATGTGAGCAAAAGGACTCTCT
GCATCAATTGACACAGGCATGAGTTGAAGCAGGAATTGAAATCCTCATGCACAGGATTAT
AAATCATTAAGCTTCACAGATCTGATCAACAAAAGGGGCTGGAGGAGACCTCCTCTTGCT
TGATAGAATCTGATTGCGCCTGTTTCATATCCTCTTTCTAAGAGGATTTAAAATTTGGTT
TCTAACATCTGTCAGAATGATTCCCCCCCTTTCTGAAGGCATTCATTAGGAAATAAAATC
AGATATAATTAACAAACAAACAAACCTATCTGCCTGCTGTTCTGACTTGTTATAATAAGT
GTTATTTCTACTTACAAACAGTTTCCTGTCAGCATCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-399, - strand, RNAz p=0.786092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-399, - strand, RNAz p=0.786092

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-399, gnl|bosTau2|chr11 (16809400-16809794)
               

               
               3-399, gnl|Hg17|chr2 (39673954-39674327)
               

               
               3-399, gnl|Mm7|chr17 (79116630-79116987)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-399, gnl|bosTau2|chr11 (16809400-16809794)
               

               
               3-399, gnl|Hg17|chr2 (39673954-39674327)
               

               
               3-399, gnl|Mm7|chr17 (79116630-79116987)

	3-399, gnl\|bosTau2\|chr11 (16809400-16809794)
	3-399, gnl\|Hg17\|chr2 (39673954-39674327)
	3-399, gnl\|Mm7\|chr17 (79116630-79116987)