Pig2-63L16
|
gagttgtagccgcccacctacaccagagccacagcaacacgggatccaagccgagtctgc
aacctgcaccacagctcacagcaacgccagatccttaacccactgaggaaggccagggat
cagacccgcaacctcattgttcctagtcggattcgttaaccactgagccacgatgggaac
tccTGAAACGAATTTAAATGAAAATAATTATTCTCTGTTCTTTTATTTAAGGCTCCGCAG
ATATAAAGTCCTAGGGAGTAGCAATTCCGACTCAGACCTTTTCTCTCGCCTGGCCCAAAT
TCTTCAAAACGGATCTCAGAAACCCCGGAGCACTACTCAGTGCAAGAGCCCAGGATCCCC
TCACAATCCAAAAACACCACCCAAGAGTCCAGTTGTCCCTCGCAGGAGTCCCAGTGCCTC
TCCTCGGAGCTCTTCCTTGCCTCGCACATCTAGTTCCTCACCATCTAGGGCTGGACGGCC
CCATG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
gagttgtagccgcccacctacaccagagccacagcaacacgggatccaagccgagtctgc
aacctgcaccacagctcacagcaacgccagatccttaacccactgaggaaggccagggat
cagacccgcaacctcattgttcctagtcggattcgttaaccactgagccacgatgggaac
tccTGAAACGAATTTAAATGAAAATAATTATTCTCTGTTCTTTTATTTAAGGCTCCGCAG
ATATAAAGTCCTAGGGAGTAGCAATTCCGACTCAGACCTTTTCTCTCGCCTGGCCCAAAT
TCTTCAAAACGGATCTCAGAAACCCCGGAGCACTACTCAGTGCAAGAGCCCAGGATCCCC
TCACAATCCAAAAACACCACCCAAGAGTCCAGTTGTCCCTCGCAGGAGTCCCAGTGCCTC
TCCTCGGAGCTCTTCCTTGCCTCGCACATCTAGTTCCTCACCATCTAGGGCTGGACGGCC
CCATG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
298-411, - strand, RNAmicro p=0.995518 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
298-411, - strand, RNAmicro p=0.995518 |
|
183-483, gnl|bosTau2|chr26 (30143073-30143369) |
|
183-483, gnl|canFam2|chr30 (12669370-12669934) |
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183-483, gnl|danRer3|chr17 (42636591-42637106) |
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183-483, gnl|dasNov1|scaffold_6445 (34258-33694) |
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183-483, gnl|echTel1|scaffold_311375 (78217-77655) |
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183-483, gnl|galGal2|chr5 (23137486-23138029) |
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183-483, gnl|hg17|chr15 (40825215-40825779) |
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183-483, gnl|Hg17|chr15 (40825792-40825496) |
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183-483, gnl|loxAfr1|scaffold_13100 (30222-29661) |
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183-483, gnl|mm7|chr2 (120480504-120481086) |
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183-483, gnl|Mm7|chr2 (120481102-120480792) |
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183-483, gnl|monDom2|scaffold_53 (11701941-11701373) |
|
183-483, gnl|oryCun1|scaffold_199912 (134972-135536) |
|
183-483, gnl|panTro1|chr16 (40810576-40811140) |
|
183-483, gnl|rheMac2|chr7 (21215146-21215710) |
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183-483, gnl|rn3|chr3 (107414092-107414671) |
|
183-483, gnl|xenTro1|scaffold_799 (243995-243389) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
183-483, gnl|bosTau2|chr26 (30143073-30143369) |
|
183-483, gnl|canFam2|chr30 (12669370-12669934) |
|
183-483, gnl|danRer3|chr17 (42636591-42637106) |
|
183-483, gnl|dasNov1|scaffold_6445 (34258-33694) |
|
183-483, gnl|echTel1|scaffold_311375 (78217-77655) |
|
183-483, gnl|galGal2|chr5 (23137486-23138029) |
|
183-483, gnl|hg17|chr15 (40825215-40825779) |
|
183-483, gnl|Hg17|chr15 (40825792-40825496) |
|
183-483, gnl|loxAfr1|scaffold_13100 (30222-29661) |
|
183-483, gnl|mm7|chr2 (120480504-120481086) |
|
183-483, gnl|Mm7|chr2 (120481102-120480792) |
|
183-483, gnl|monDom2|scaffold_53 (11701941-11701373) |
|
183-483, gnl|oryCun1|scaffold_199912 (134972-135536) |
|
183-483, gnl|panTro1|chr16 (40810576-40811140) |
|
183-483, gnl|rheMac2|chr7 (21215146-21215710) |
|
183-483, gnl|rn3|chr3 (107414092-107414671) |
|
183-483, gnl|xenTro1|scaffold_799 (243995-243389) |
