Non-Coding RNA Search

Pig2-64A15

Sequence:


               
               GTGAACATAAAAACACATACACACATATACACACATGTGAAAAATATACATATATATCTG
CGTGTGAAGTGGAAAGCTTACCTTTTCCTATCTAGATTTAAGGACCTATTTTAGACATTT
GTTATGTTTTGTGAAAAGAATGTTCTATTTGCAACAACAAAACATTTAATTCTTACTGTA
TCTCTGGCTGTTTAATGAGGACGTTTCACATTAAATGGTAAAACAACGTGGAAGATGGTA
GAATGTAGTCATTATTTAAGGAAATGTTCACCCACATATTTCTGAAGTTTGCTTTGTGCC
TCCAAGTATTATTTAATTAAAGTGTTTTATGTTTGCAGAATCTTTGTTGCTGTGCTAAGG
ATGTGGGTGAATATCATTTTTTAAAATTTTAAAAACAACAAAAAAAAAAATAGCAAAACA
AAAACACTAAACCAAGAGGGGAACTTTTATAAAGCAATGTAAATATTTAACCCCATGGCT
GTTGTTACGTAAGACATGAGATTTTAATAAATAACTACATTCTCACAACATCTGTTGAAT
TTTTTAGGAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAACATAAAAACACATACACACATATACACACATGTGAAAAATATACATATATATCTG
CGTGTGAAGTGGAAAGCTTACCTTTTCCTATCTAGATTTAAGGACCTATTTTAGACATTT
GTTATGTTTTGTGAAAAGAATGTTCTATTTGCAACAACAAAACATTTAATTCTTACTGTA
TCTCTGGCTGTTTAATGAGGACGTTTCACATTAAATGGTAAAACAACGTGGAAGATGGTA
GAATGTAGTCATTATTTAAGGAAATGTTCACCCACATATTTCTGAAGTTTGCTTTGTGCC
TCCAAGTATTATTTAATTAAAGTGTTTTATGTTTGCAGAATCTTTGTTGCTGTGCTAAGG
ATGTGGGTGAATATCATTTTTTAAAATTTTAAAAACAACAAAAAAAAAAATAGCAAAACA
AAAACACTAAACCAAGAGGGGAACTTTTATAAAGCAATGTAAATATTTAACCCCATGGCT
GTTGTTACGTAAGACATGAGATTTTAATAAATAACTACATTCTCACAACATCTGTTGAAT
TTTTTAGGAACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, - strand, RNAz p=0.992276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.992276

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               7-75, - strand, RNAmicro p=0.99179

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               7-75, - strand, RNAmicro p=0.99179

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               59-117, BP425782 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP425782.1|), blast E-value=2e-21, identity=98.31% 
               

               
               59-117, DB355818 HEMBA1 Homo sapiens cDNA clone HEMBA1002370 3', mRNA 
(dbj|DB355818.1|), blast E-value=2e-21, identity=98.31% 
               

               
               59-117, ik38a04.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ287980.1|), 
blast E-value=2e-21, identity=98.31% 
               

               
               59-117, ik38a04.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ417437.1|), 
blast E-value=2e-21, identity=98.31% 
               

               
               59-117, il17c11.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ631158.1|), 
blast E-value=2e-21, identity=98.31% 
               

               
               59-117, il17c11.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ631434.1|), 
blast E-value=2e-21, identity=98.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               59-117, BP425782 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP425782.1|), blast E-value=2e-21, identity=98.31% 
               

               
               59-117, DB355818 HEMBA1 Homo sapiens cDNA clone HEMBA1002370 3', mRNA 
(dbj|DB355818.1|), blast E-value=2e-21, identity=98.31% 
               

               
               59-117, ik38a04.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ287980.1|), 
blast E-value=2e-21, identity=98.31% 
               

               
               59-117, ik38a04.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ417437.1|), 
blast E-value=2e-21, identity=98.31% 
               

               
               59-117, il17c11.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ631158.1|), 
blast E-value=2e-21, identity=98.31% 
               

               
               59-117, il17c11.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|BQ631434.1|), 
blast E-value=2e-21, identity=98.31%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-553, gnl|bosTau2|chr16 (51801221-51800673)
               

               
               1-553, gnl|Hg17|chr1 (210600798-210601344)
               

               
               1-553, gnl|Mm7|chr1 (189652444-189651909)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-553, gnl|bosTau2|chr16 (51801221-51800673)
               

               
               1-553, gnl|Hg17|chr1 (210600798-210601344)
               

               
               1-553, gnl|Mm7|chr1 (189652444-189651909)

	59-117, BP425782 Homo sapiens small intestine Homo sapiens cDNA clone (dbj\|BP425782.1\|), blast E-value=2e-21, identity=98.31%
	59-117, DB355818 HEMBA1 Homo sapiens cDNA clone HEMBA1002370 3', mRNA (dbj\|DB355818.1\|), blast E-value=2e-21, identity=98.31%
	59-117, ik38a04.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|BQ287980.1\|), blast E-value=2e-21, identity=98.31%
	59-117, ik38a04.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|BQ417437.1\|), blast E-value=2e-21, identity=98.31%
	59-117, il17c11.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|BQ631158.1\|), blast E-value=2e-21, identity=98.31%
	59-117, il17c11.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|BQ631434.1\|), blast E-value=2e-21, identity=98.31%

	1-553, gnl\|bosTau2\|chr16 (51801221-51800673)
	1-553, gnl\|Hg17\|chr1 (210600798-210601344)
	1-553, gnl\|Mm7\|chr1 (189652444-189651909)