Non-Coding RNA Search

Pig2-64N04

Sequence:


               
               CCGACTCCGGCCGGTCCAGGGAGGAAGAAAAGCTGCTTCAGCCTCCTGCCAGCCAAGTGG
TAGCCCAGTGGGACTGAAGGGGACAGGCCTTTTGGTGGTGCCTCATCAGGGAGACCCCTG
AACCCCAGGGTCAGGGCGGGAGTTCAGTCACTGAGCCATGCCAGGCCCCGGGCGGCCAGC
AGCAAGCCCAACCCCAGCACCCACATAGTCATGAACAGCCACAGACACAATGGCTGTGGG
GGACGGCCGCTGGGTGGCGGGCTGGGTGCCTTGGCAAGAGACCCTCCAGACCCCGAGGCT
GGCCACCCCCCGCAGCCTCCGAATGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGACTCCGGCCGGTCCAGGGAGGAAGAAAAGCTGCTTCAGCCTCCTGCCAGCCAAGTGG
TAGCCCAGTGGGACTGAAGGGGACAGGCCTTTTGGTGGTGCCTCATCAGGGAGACCCCTG
AACCCCAGGGTCAGGGCGGGAGTTCAGTCACTGAGCCATGCCAGGCCCCGGGCGGCCAGC
AGCAAGCCCAACCCCAGCACCCACATAGTCATGAACAGCCACAGACACAATGGCTGTGGG
GGACGGCCGCTGGGTGGCGGGCTGGGTGCCTTGGCAAGAGACCCTCCAGACCCCGAGGCT
GGCCACCCCCCGCAGCCTCCGAATGGCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               211-329, - strand, RNAz p=0.50706

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-329, - strand, RNAz p=0.50706

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               164-277, + strand, RNAmicro p=0.998174
               

               
               134-274, - strand, RNAmicro p=0.989878

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               164-277, + strand, RNAmicro p=0.998174
               

               
               134-274, - strand, RNAmicro p=0.989878

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               129-329, gnl|bosTau2|chr7 (4463796-4463596)
               

               
               129-329, gnl|Hg17|chr19 (17945616-17945816)
               

               
               129-329, gnl|Mm7|chr8 (69309983-69309783)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-329, gnl|bosTau2|chr7 (4463796-4463596)
               

               
               129-329, gnl|Hg17|chr19 (17945616-17945816)
               

               
               129-329, gnl|Mm7|chr8 (69309983-69309783)

	164-277, + strand, RNAmicro p=0.998174
	134-274, - strand, RNAmicro p=0.989878

	129-329, gnl\|bosTau2\|chr7 (4463796-4463596)
	129-329, gnl\|Hg17\|chr19 (17945616-17945816)
	129-329, gnl\|Mm7\|chr8 (69309983-69309783)