Non-Coding RNA Search

Pig2-65I08

Sequence:


               
               AAGATGTTAAAACAAATGCCTTGGTTTCAATTTCTAGTATCTATTGTGTTGGCTTTACAA
ATAATTTTTGCAGTCTTTTGCTGTGCTGTACATTACTGTATGTATAAATTGTGAACGACC
TAAAAATAAGGTGTAAGGAGCTTTTGCAAATGACACACATACAAAAAAAAAAAAGCTTTA
TTGGTTAATAGGATGAATGGGAAAGTTTTTTAAAAAAAATTCTATTTGGCTGGAAACTAT
TTAAGTCCTATGTTTGCCTAAACAAGGAAAAAAAACCTTTTTTTTTTAGAAAAGGGTAAT
GCTGCGCTGCCTTAAAGAACCCTTCACAGGGTTTTAAAAAAAGGGAAAGCTCGCCCTTTT
TA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGTTAAAACAAATGCCTTGGTTTCAATTTCTAGTATCTATTGTGTTGGCTTTACAA
ATAATTTTTGCAGTCTTTTGCTGTGCTGTACATTACTGTATGTATAAATTGTGAACGACC
TAAAAATAAGGTGTAAGGAGCTTTTGCAAATGACACACATACAAAAAAAAAAAAGCTTTA
TTGGTTAATAGGATGAATGGGAAAGTTTTTTAAAAAAAATTCTATTTGGCTGGAAACTAT
TTAAGTCCTATGTTTGCCTAAACAAGGAAAAAAAACCTTTTTTTTTTAGAAAAGGGTAAT
GCTGCGCTGCCTTAAAGAACCCTTCACAGGGTTTTAAAAAAAGGGAAAGCTCGCCCTTTT
TA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-159, + strand, RNAz p=0.901101

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, + strand, RNAz p=0.901101

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_000901, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000901, +

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-361, gnl|bosTau2|chr17 (6063063-6062700)
               

               
               1-361, gnl|canFam2|chr15 (49401913-49402195)
               

               
               1-361, gnl|danRer3|chr1 (36197454-36197186)
               

               
               1-361, gnl|dasNov1|scaffold_26851 (17704-17431)
               

               
               1-361, gnl|echTel1|scaffold_316456 (15951-15695)
               

               
               1-361, gnl|fr1|chrUn (26482332-26482559)
               

               
               1-361, gnl|galGal2|chr4 (32587108-32587357)
               

               
               1-361, gnl|hg17|chr4 (149359089-149359345)
               

               
               1-361, gnl|Hg17|chr4 (149359480-149359136)
               

               
               1-361, gnl|loxAfr1|scaffold_587 (27358-27096)
               

               
               1-361, gnl|mm7|chr8 (75787165-75786915)
               

               
               1-361, gnl|Mm7|chr8 (75786780-75787119)
               

               
               1-361, gnl|monDom2|scaffold_9 (17036614-17036878)
               

               
               1-361, gnl|oryCun1|scaffold_203087 (92756-92496)
               

               
               1-361, gnl|panTro1|chr3 (166631095-166631349)
               

               
               1-361, gnl|rheMac2|chr5 (140293181-140293438)
               

               
               1-361, gnl|rn3|chr19 (32534088-32534341)
               

               
               1-361, gnl|tetNig1|chr18 (7191317-7191544)
               

               
               1-361, gnl|xenTro1|scaffold_512 (149970-150231)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-361, gnl|bosTau2|chr17 (6063063-6062700)
               

               
               1-361, gnl|canFam2|chr15 (49401913-49402195)
               

               
               1-361, gnl|danRer3|chr1 (36197454-36197186)
               

               
               1-361, gnl|dasNov1|scaffold_26851 (17704-17431)
               

               
               1-361, gnl|echTel1|scaffold_316456 (15951-15695)
               

               
               1-361, gnl|fr1|chrUn (26482332-26482559)
               

               
               1-361, gnl|galGal2|chr4 (32587108-32587357)
               

               
               1-361, gnl|hg17|chr4 (149359089-149359345)
               

               
               1-361, gnl|Hg17|chr4 (149359480-149359136)
               

               
               1-361, gnl|loxAfr1|scaffold_587 (27358-27096)
               

               
               1-361, gnl|mm7|chr8 (75787165-75786915)
               

               
               1-361, gnl|Mm7|chr8 (75786780-75787119)
               

               
               1-361, gnl|monDom2|scaffold_9 (17036614-17036878)
               

               
               1-361, gnl|oryCun1|scaffold_203087 (92756-92496)
               

               
               1-361, gnl|panTro1|chr3 (166631095-166631349)
               

               
               1-361, gnl|rheMac2|chr5 (140293181-140293438)
               

               
               1-361, gnl|rn3|chr19 (32534088-32534341)
               

               
               1-361, gnl|tetNig1|chr18 (7191317-7191544)
               

               
               1-361, gnl|xenTro1|scaffold_512 (149970-150231)

	1-361, gnl\|bosTau2\|chr17 (6063063-6062700)
	1-361, gnl\|canFam2\|chr15 (49401913-49402195)
	1-361, gnl\|danRer3\|chr1 (36197454-36197186)
	1-361, gnl\|dasNov1\|scaffold_26851 (17704-17431)
	1-361, gnl\|echTel1\|scaffold_316456 (15951-15695)
	1-361, gnl\|fr1\|chrUn (26482332-26482559)
	1-361, gnl\|galGal2\|chr4 (32587108-32587357)
	1-361, gnl\|hg17\|chr4 (149359089-149359345)
	1-361, gnl\|Hg17\|chr4 (149359480-149359136)
	1-361, gnl\|loxAfr1\|scaffold_587 (27358-27096)
	1-361, gnl\|mm7\|chr8 (75787165-75786915)
	1-361, gnl\|Mm7\|chr8 (75786780-75787119)
	1-361, gnl\|monDom2\|scaffold_9 (17036614-17036878)
	1-361, gnl\|oryCun1\|scaffold_203087 (92756-92496)
	1-361, gnl\|panTro1\|chr3 (166631095-166631349)
	1-361, gnl\|rheMac2\|chr5 (140293181-140293438)
	1-361, gnl\|rn3\|chr19 (32534088-32534341)
	1-361, gnl\|tetNig1\|chr18 (7191317-7191544)
	1-361, gnl\|xenTro1\|scaffold_512 (149970-150231)