Non-Coding RNA Search

Pig2-65O11

Sequence:


               
               GTTCAGAGTAATAGGACCAGGGCACCCCATCCGGGCACTGGTGGGGGACGAAGTGGAATT
GCCATGTCGCATCTCGCCTGGAAAGAATGCTACAGGCATGGAGGTGGGATGGTACCGGCC
CCCCTTCTCCAGGGTGGTTCATCTCTACCGAAATGGCAAGGACCAAGATGAAGAGCAGGC
GCCTGAATACCGGGGCCGGACAGAGCTGCTGAAAGAGACTATCGGGGAGGGGAAGGTGAC
CCTCAGGATCCGGCATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGA
TCATTCTTACCAAGAAGAGGCAGCGATGGAATTGAAAGTGGAAGGTGAGTAGAGCATATG
ATAGTAGGTACTGGCTTTTGGGTGGCCAAGATCTCTCTTTGAGTTTCAATCATCCTCTCA
GTTGAGATGACACCCTTCAACCCAAACAGCTCACTCCTGGGAGTGGAGGAACTTATATGC
ACTCAATGTCCCATACATCCGATATTCTGAGTGGGAAAGAAACCAGAATCAGAGCCCATG
CCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAGAGTAATAGGACCAGGGCACCCCATCCGGGCACTGGTGGGGGACGAAGTGGAATT
GCCATGTCGCATCTCGCCTGGAAAGAATGCTACAGGCATGGAGGTGGGATGGTACCGGCC
CCCCTTCTCCAGGGTGGTTCATCTCTACCGAAATGGCAAGGACCAAGATGAAGAGCAGGC
GCCTGAATACCGGGGCCGGACAGAGCTGCTGAAAGAGACTATCGGGGAGGGGAAGGTGAC
CCTCAGGATCCGGCATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGA
TCATTCTTACCAAGAAGAGGCAGCGATGGAATTGAAAGTGGAAGGTGAGTAGAGCATATG
ATAGTAGGTACTGGCTTTTGGGTGGCCAAGATCTCTCTTTGAGTTTCAATCATCCTCTCA
GTTGAGATGACACCCTTCAACCCAAACAGCTCACTCCTGGGAGTGGAGGAACTTATATGC
ACTCAATGTCCCATACATCCGATATTCTGAGTGGGAAAGAAACCAGAATCAGAGCCCATG
CCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55626118|ref|XP_518318.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55626118|ref|XP_518318.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.619221
               

               
               200-358, + strand, RNAz p=0.953601

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.619221
               

               
               200-358, + strand, RNAz p=0.953601

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-462, gnl|bosTau2|chr23 (24035862-24035400)
               

               
               1-462, gnl|canFam2|chr35 (29276408-29276802)
               

               
               1-462, gnl|dasNov1|scaffold_107656 (2064-1670)
               

               
               1-462, gnl|echTel1|scaffold_301512 (3126-2735)
               

               
               1-462, gnl|galGal2|chr28 (745272-744874)
               

               
               1-462, gnl|hg17|chr6 (29735040-29735434)
               

               
               1-462, gnl|Hg17|chr6 (29735079-29735527)
               

               
               1-462, gnl|loxAfr1|scaffold_15223 (39217-39609)
               

               
               1-462, gnl|mm7|chr17 (35172305-35171906)
               

               
               1-462, gnl|Mm7|chr17 (35172254-35171814)
               

               
               1-462, gnl|monDom2|scaffold_42 (19250752-19250363)
               

               
               1-462, gnl|oryCun1|scaffold_213232 (263294-262902)
               

               
               1-462, gnl|panTro1|chr5 (30246234-30246628)
               

               
               1-462, gnl|rheMac2|chr4 (29396487-29396881)
               

               
               1-462, gnl|rn3|chr20 (1603618-1604019)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-462, gnl|bosTau2|chr23 (24035862-24035400)
               

               
               1-462, gnl|canFam2|chr35 (29276408-29276802)
               

               
               1-462, gnl|dasNov1|scaffold_107656 (2064-1670)
               

               
               1-462, gnl|echTel1|scaffold_301512 (3126-2735)
               

               
               1-462, gnl|galGal2|chr28 (745272-744874)
               

               
               1-462, gnl|hg17|chr6 (29735040-29735434)
               

               
               1-462, gnl|Hg17|chr6 (29735079-29735527)
               

               
               1-462, gnl|loxAfr1|scaffold_15223 (39217-39609)
               

               
               1-462, gnl|mm7|chr17 (35172305-35171906)
               

               
               1-462, gnl|Mm7|chr17 (35172254-35171814)
               

               
               1-462, gnl|monDom2|scaffold_42 (19250752-19250363)
               

               
               1-462, gnl|oryCun1|scaffold_213232 (263294-262902)
               

               
               1-462, gnl|panTro1|chr5 (30246234-30246628)
               

               
               1-462, gnl|rheMac2|chr4 (29396487-29396881)
               

               
               1-462, gnl|rn3|chr20 (1603618-1604019)

	40-159, - strand, RNAz p=0.619221
	200-358, + strand, RNAz p=0.953601

	1-462, gnl\|bosTau2\|chr23 (24035862-24035400)
	1-462, gnl\|canFam2\|chr35 (29276408-29276802)
	1-462, gnl\|dasNov1\|scaffold_107656 (2064-1670)
	1-462, gnl\|echTel1\|scaffold_301512 (3126-2735)
	1-462, gnl\|galGal2\|chr28 (745272-744874)
	1-462, gnl\|hg17\|chr6 (29735040-29735434)
	1-462, gnl\|Hg17\|chr6 (29735079-29735527)
	1-462, gnl\|loxAfr1\|scaffold_15223 (39217-39609)
	1-462, gnl\|mm7\|chr17 (35172305-35171906)
	1-462, gnl\|Mm7\|chr17 (35172254-35171814)
	1-462, gnl\|monDom2\|scaffold_42 (19250752-19250363)
	1-462, gnl\|oryCun1\|scaffold_213232 (263294-262902)
	1-462, gnl\|panTro1\|chr5 (30246234-30246628)
	1-462, gnl\|rheMac2\|chr4 (29396487-29396881)
	1-462, gnl\|rn3\|chr20 (1603618-1604019)