Non-Coding RNA Search

Pig2-67G22

Sequence:


               
               ATTCAGCAAAGATGCAGACCTTGAAGATAGCTGACATATGGAAACTGTTAGAATGAGATT
AGAAGCTGCCAACAACCTTCAATCATCATTACTCACAGTGAGTCCTGATGAGTAATGGGA
TGATCAGTTAGTTGTACCTCCAAGTACATGGAGGATACTCTCAAAGAGAGAGAGAGCTGA
GCCTCCAGAGGCTGAAGGACTGTCAGATGGAGTCTGAACTCCTTGTTCAACTGAAGATCA
ACAATCTTGAAAAACAGAAACTGCATTGTGGGATGACATGAATTCTCAAAGGATCAGAAC
TGGACGCTGGGACAAGCCATGAATGGAGAAGAGAAGACCTTGAGGAGAGAAGAGTCAGGG
AGGAAAGAAAAATAAGGGACAAAATATAGCAGTAAGGAACATTTTTGATGATTCCAGATA
GGCCTGGAAATCAAGATTCCTCATGGCCCTGCTTATAAAAGGGTATCAGGGACTGGCATC
TTGGAGAGCACTCAGTGGATAATCAATAGATACTTACTGACCGAATGACTGATCGACTAA
TGCACTTTTCATTTGGATTCCAAGTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGCAAAGATGCAGACCTTGAAGATAGCTGACATATGGAAACTGTTAGAATGAGATT
AGAAGCTGCCAACAACCTTCAATCATCATTACTCACAGTGAGTCCTGATGAGTAATGGGA
TGATCAGTTAGTTGTACCTCCAAGTACATGGAGGATACTCTCAAAGAGAGAGAGAGCTGA
GCCTCCAGAGGCTGAAGGACTGTCAGATGGAGTCTGAACTCCTTGTTCAACTGAAGATCA
ACAATCTTGAAAAACAGAAACTGCATTGTGGGATGACATGAATTCTCAAAGGATCAGAAC
TGGACGCTGGGACAAGCCATGAATGGAGAAGAGAAGACCTTGAGGAGAGAAGAGTCAGGG
AGGAAAGAAAAATAAGGGACAAAATATAGCAGTAAGGAACATTTTTGATGATTCCAGATA
GGCCTGGAAATCAAGATTCCTCATGGCCCTGCTTATAAAAGGGTATCAGGGACTGGCATC
TTGGAGAGCACTCAGTGGATAATCAATAGATACTTACTGACCGAATGACTGATCGACTAA
TGCACTTTTCATTTGGATTCCAAGTGCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-153, - strand, RNAz p=0.88669
               

               
               348-457, - strand, RNAz p=0.999427

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-153, - strand, RNAz p=0.88669
               

               
               348-457, - strand, RNAz p=0.999427

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-315, gnl|bosTau2|chr10 (53036332-53036659)
               

               
               1-315, gnl|Hg17|chr14 (66013113-66012784)
               

               
               1-315, gnl|Mm7|chr12 (76142368-76142037)
               


               
               316-471, gnl|bosTau2|chr10 (53064241-53064401)
               

               
               316-471, gnl|Hg17|chr14 (65987948-65987779)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-315, gnl|bosTau2|chr10 (53036332-53036659)
               

               
               1-315, gnl|Hg17|chr14 (66013113-66012784)
               

               
               1-315, gnl|Mm7|chr12 (76142368-76142037)
               


               
               316-471, gnl|bosTau2|chr10 (53064241-53064401)
               

               
               316-471, gnl|Hg17|chr14 (65987948-65987779)

	1-153, - strand, RNAz p=0.88669
	348-457, - strand, RNAz p=0.999427

	1-315, gnl\|bosTau2\|chr10 (53036332-53036659)
	1-315, gnl\|Hg17\|chr14 (66013113-66012784)
	1-315, gnl\|Mm7\|chr12 (76142368-76142037)

	316-471, gnl\|bosTau2\|chr10 (53064241-53064401)
	316-471, gnl\|Hg17\|chr14 (65987948-65987779)