Pig2-67H02
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GGCCTGCCCAGCGCCGAGACCATGAAGAGACGTCCCTGGGGAGGGTGTCCTGTGTCACCA
AGCGGCGCCCCCCGCTGAGCCACATGATCAGCCTCTTCATCAAGGACACCACCACCAGCA
CAGAACAGATGCTGTCCCACGGCACGGCCGACGTGGACTTAGAGGCCTGCACAGACTTCT
GGGACGGAGCCGACATCTACCCGCTTTCGGGTTCTGACAGAAAGAAAGTGCTGGATTTCT
ACCAGCGAGCCTGCCTGTCTGGTTACTGCGTCGGCCGTTCGCCTACAAGCCCATGAGCTG
CGCCCTGTCCTCCCAGCTCAACGGCAAGTGCATCGAGCTGGTGCAGGCGCCCGGCCAGAG
CAGCATCTTCACGATGTGTGAGCTGCCCAGCACCGTCCCCATCAAGCTGAGCGCCCGCCG
CGGCAGCTGGAGCTCAGATGAAGGGATCGGGGAGGTGCTGGAGAAGGAAGACTGCATGCA
GGCCCTGAGCGGCCAGATCTTCATGGGCATG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGCCTGCCCAGCGCCGAGACCATGAAGAGACGTCCCTGGGGAGGGTGTCCTGTGTCACCA
AGCGGCGCCCCCCGCTGAGCCACATGATCAGCCTCTTCATCAAGGACACCACCACCAGCA
CAGAACAGATGCTGTCCCACGGCACGGCCGACGTGGACTTAGAGGCCTGCACAGACTTCT
GGGACGGAGCCGACATCTACCCGCTTTCGGGTTCTGACAGAAAGAAAGTGCTGGATTTCT
ACCAGCGAGCCTGCCTGTCTGGTTACTGCGTCGGCCGTTCGCCTACAAGCCCATGAGCTG
CGCCCTGTCCTCCCAGCTCAACGGCAAGTGCATCGAGCTGGTGCAGGCGCCCGGCCAGAG
CAGCATCTTCACGATGTGTGAGCTGCCCAGCACCGTCCCCATCAAGCTGAGCGCCCGCCG
CGGCAGCTGGAGCTCAGATGAAGGGATCGGGGAGGTGCTGGAGAAGGAAGACTGCATGCA
GGCCCTGAGCGGCCAGATCTTCATGGGCATG
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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278-372, 108316 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW656199.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, 222217 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF074736.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, 496690 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM031322.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, LB0131.CR_N10 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DT721708.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, LB02514.CR_K13 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV871430.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, LB01740.CR_G03 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE335212.1|),
blast E-value=4e-38, identity=96.84% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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278-372, 108316 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW656199.1|),
blast E-value=4e-38, identity=96.84% |
|
278-372, 222217 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF074736.1|),
blast E-value=4e-38, identity=96.84% |
|
278-372, 496690 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM031322.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, LB0131.CR_N10 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DT721708.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, LB02514.CR_K13 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV871430.1|),
blast E-value=4e-38, identity=96.84% |
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278-372, LB01740.CR_G03 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE335212.1|),
blast E-value=4e-38, identity=96.84% |
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4-118, gnl|bosTau2|chr19 (51587170-51587055) |
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4-118, gnl|canFam2|chr9 (8036095-8035900) |
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4-118, gnl|danRer3|chr12 (31064480-31064302) |
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4-118, gnl|dasNov1|scaffold_104095 (3445-3627) |
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4-118, gnl|echTel1|scaffold_260026 (5000-4804) |
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4-118, gnl|fr1|chrUn (145854442-145854625) |
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4-118, gnl|galGal2|chr3_random (1502199-1502382) |
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4-118, gnl|hg17|chr17 (71000603-71000799) |
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4-118, gnl|Hg17|chr17 (71000664-71000779) |
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4-118, gnl|loxAfr1|scaffold_26813 (32438-32637) |
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4-118, gnl|mm7|chr11 (115901361-115901557) |
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4-118, gnl|Mm7|chr11 (115901421-115901536) |
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4-118, gnl|monDom2|scaffold_18 (33135858-33136054) |
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4-118, gnl|oryCun1|scaffold_182687 (6999-6816) |
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4-118, gnl|panTro1|chr19 (74353083-74353279) |
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4-118, gnl|rheMac2|chr16 (70798721-70798917) |
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4-118, gnl|rn3|chr10 (105908678-105908874) |
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4-118, gnl|tetNig1|chrUn_random (41715299-41715103) |
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4-118, gnl|xenTro1|scaffold_632 (250858-251023) |
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218-438, gnl|bosTau2|chr19 (51586484-51586266) |
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218-438, gnl|Hg17|chr17 (71001372-71001590) |
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218-438, gnl|Mm7|chr11 (115902099-115902317) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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4-118, gnl|bosTau2|chr19 (51587170-51587055) |
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4-118, gnl|canFam2|chr9 (8036095-8035900) |
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4-118, gnl|danRer3|chr12 (31064480-31064302) |
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4-118, gnl|dasNov1|scaffold_104095 (3445-3627) |
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4-118, gnl|echTel1|scaffold_260026 (5000-4804) |
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4-118, gnl|fr1|chrUn (145854442-145854625) |
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4-118, gnl|galGal2|chr3_random (1502199-1502382) |
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4-118, gnl|hg17|chr17 (71000603-71000799) |
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4-118, gnl|Hg17|chr17 (71000664-71000779) |
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4-118, gnl|loxAfr1|scaffold_26813 (32438-32637) |
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4-118, gnl|mm7|chr11 (115901361-115901557) |
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4-118, gnl|Mm7|chr11 (115901421-115901536) |
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4-118, gnl|monDom2|scaffold_18 (33135858-33136054) |
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4-118, gnl|oryCun1|scaffold_182687 (6999-6816) |
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4-118, gnl|panTro1|chr19 (74353083-74353279) |
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4-118, gnl|rheMac2|chr16 (70798721-70798917) |
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4-118, gnl|rn3|chr10 (105908678-105908874) |
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4-118, gnl|tetNig1|chrUn_random (41715299-41715103) |
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4-118, gnl|xenTro1|scaffold_632 (250858-251023) |
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218-438, gnl|bosTau2|chr19 (51586484-51586266) |
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218-438, gnl|Hg17|chr17 (71001372-71001590) |
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218-438, gnl|Mm7|chr11 (115902099-115902317) |
