Non-Coding RNA Search

Pig2-67M05

Sequence:


               
               GCAAATTGCTGGCATTGGTACTAGCCTTTTCCATATATAATTATGATGCATTTGATGCCA
CCGACATAAAAGAAGAGGGCCTACAGCCTAGACTAGATTGAGTTTTAATTAAACCTTTTC
AGCCATAGCCTGATAAGAATCAGGCTGGGTCTAGACGTTATCAGACTGTGGGCCTGTATT
ACCTTTGTGAGCCAATGTTAATGTTTACTGCCAACCTCGCCTAGCAATGCCAGTTTGCAG
CCATGATTGTGTAGACGACTCTCAGTAACTACTGTTTATATCTAAAGAGGTGCCGATGTT
ATGAAAGTAGCTCGTGATTATTTGGACAAGCAGGGTACGTAAATTTAAGTGACATTTTAA
AAAAGTGCAATTAAGGAAATCCTAGAGTAGAGTGCTCTTACCAGGAAAAAAGGTAAGTAT
TGGTAGAATATCCTAGCATGAGAACTCTTTTGAACATGACACGGAATTTTGACAGGGTTT
ATACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAATTGCTGGCATTGGTACTAGCCTTTTCCATATATAATTATGATGCATTTGATGCCA
CCGACATAAAAGAAGAGGGCCTACAGCCTAGACTAGATTGAGTTTTAATTAAACCTTTTC
AGCCATAGCCTGATAAGAATCAGGCTGGGTCTAGACGTTATCAGACTGTGGGCCTGTATT
ACCTTTGTGAGCCAATGTTAATGTTTACTGCCAACCTCGCCTAGCAATGCCAGTTTGCAG
CCATGATTGTGTAGACGACTCTCAGTAACTACTGTTTATATCTAAAGAGGTGCCGATGTT
ATGAAAGTAGCTCGTGATTATTTGGACAAGCAGGGTACGTAAATTTAAGTGACATTTTAA
AAAAGTGCAATTAAGGAAATCCTAGAGTAGAGTGCTCTTACCAGGAAAAAAGGTAAGTAT
TGGTAGAATATCCTAGCATGAGAACTCTTTTGAACATGACACGGAATTTTGACAGGGTTT
ATACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               69-217, - strand, RNAz p=0.999754

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-217, - strand, RNAz p=0.999754

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               83-213, DA310639 BRHIP2 Homo sapiens cDNA clone BRHIP2028670 5', mRNA 
(dbj|DA310639.1|), blast E-value=1e-32, identity=89.47% 
               

               
               83-213, DB305978 BRAWH3 Homo sapiens cDNA clone BRAWH3040605 3', mRNA 
(dbj|DB305978.1|), blast E-value=1e-32, identity=89.47% 
               

               
               83-213, AJ709362 CMPD01 Homo sapiens cDNA clone CMPD04882, mRNA sequence 
(emb|AJ709362.1|), blast E-value=1e-32, identity=89.47% 
               

               
               83-213, iq19d08.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CA948218.1|), 
blast E-value=1e-32, identity=89.47% 
               

               
               83-213, iq19d08.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK826563.1|), 
blast E-value=1e-32, identity=89.47% 
               

               
               83-213, nbj12g10.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB386185.1|), blast E-value=1e-32, identity=89.47%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               83-213, DA310639 BRHIP2 Homo sapiens cDNA clone BRHIP2028670 5', mRNA 
(dbj|DA310639.1|), blast E-value=1e-32, identity=89.47% 
               

               
               83-213, DB305978 BRAWH3 Homo sapiens cDNA clone BRAWH3040605 3', mRNA 
(dbj|DB305978.1|), blast E-value=1e-32, identity=89.47% 
               

               
               83-213, AJ709362 CMPD01 Homo sapiens cDNA clone CMPD04882, mRNA sequence 
(emb|AJ709362.1|), blast E-value=1e-32, identity=89.47% 
               

               
               83-213, iq19d08.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CA948218.1|), 
blast E-value=1e-32, identity=89.47% 
               

               
               83-213, iq19d08.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK826563.1|), 
blast E-value=1e-32, identity=89.47% 
               

               
               83-213, nbj12g10.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB386185.1|), blast E-value=1e-32, identity=89.47%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-485, gnl|bosTau2|chr3 (57864593-57864110)
               

               
               2-485, gnl|Hg17|chr1 (56890819-56891306)
               

               
               2-485, gnl|Mm7|chr4 (104407781-104407286)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-485, gnl|bosTau2|chr3 (57864593-57864110)
               

               
               2-485, gnl|Hg17|chr1 (56890819-56891306)
               

               
               2-485, gnl|Mm7|chr4 (104407781-104407286)

	83-213, DA310639 BRHIP2 Homo sapiens cDNA clone BRHIP2028670 5', mRNA (dbj\|DA310639.1\|), blast E-value=1e-32, identity=89.47%
	83-213, DB305978 BRAWH3 Homo sapiens cDNA clone BRAWH3040605 3', mRNA (dbj\|DB305978.1\|), blast E-value=1e-32, identity=89.47%
	83-213, AJ709362 CMPD01 Homo sapiens cDNA clone CMPD04882, mRNA sequence (emb\|AJ709362.1\|), blast E-value=1e-32, identity=89.47%
	83-213, iq19d08.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|CA948218.1\|), blast E-value=1e-32, identity=89.47%
	83-213, iq19d08.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|CK826563.1\|), blast E-value=1e-32, identity=89.47%
	83-213, nbj12g10.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA (gb\|EB386185.1\|), blast E-value=1e-32, identity=89.47%

	2-485, gnl\|bosTau2\|chr3 (57864593-57864110)
	2-485, gnl\|Hg17\|chr1 (56890819-56891306)
	2-485, gnl\|Mm7\|chr4 (104407781-104407286)