Non-Coding RNA Search

Pig2-67N16

Sequence:


               
               AAAGATTATGTCTCTGCCCTCCCCCTCCCCCAAATTCACTAACCCGGTTTGCTTGGTCCA
AACAAAGGTGACACCATGGAGCCCCTCTATCAGGCCGGGTCCATTCTCATGAAGGTGAAC
ACTTTACAAGGGAAGAAGATGGTGGAGAGCGGCCTCCAGTCTGGAGACTTCTCCATCCCC
CCATCGTGGGCCTCCTGCCTCCTGCCACCGGCCGACCTGGAGATCCTGCAGCAGAAGGTG
GCCGGGGTGCAGCGGGAGCTGGAGGACTTTAAGAAGGAGGCACTGAAGGCCATCCATTAC
CTGGAGGACGCCTTCTGCGAGATGAACGGGGCGCTGGCACAGCAAGAGGAGCAGGCAGCC
CGCGTGAAGCAGCGGCTGCGAGAGGAGGAGGACCGTGGCATCGTGCGAAACAAGGTCCTC
ACCTTCTTGCTGCCCCGAGAGAAGCAGCTCCGGGAGCACTGCAAGCGCCTGGAGTGCCTG
CTGCTGCGCCTGAGCCACGATGCGCTGATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGATTATGTCTCTGCCCTCCCCCTCCCCCAAATTCACTAACCCGGTTTGCTTGGTCCA
AACAAAGGTGACACCATGGAGCCCCTCTATCAGGCCGGGTCCATTCTCATGAAGGTGAAC
ACTTTACAAGGGAAGAAGATGGTGGAGAGCGGCCTCCAGTCTGGAGACTTCTCCATCCCC
CCATCGTGGGCCTCCTGCCTCCTGCCACCGGCCGACCTGGAGATCCTGCAGCAGAAGGTG
GCCGGGGTGCAGCGGGAGCTGGAGGACTTTAAGAAGGAGGCACTGAAGGCCATCCATTAC
CTGGAGGACGCCTTCTGCGAGATGAACGGGGCGCTGGCACAGCAAGAGGAGCAGGCAGCC
CGCGTGAAGCAGCGGCTGCGAGAGGAGGAGGACCGTGGCATCGTGCGAAACAAGGTCCTC
ACCTTCTTGCTGCCCCGAGAGAAGCAGCTCCGGGAGCACTGCAAGCGCCTGGAGTGCCTG
CTGCTGCGCCTGAGCCACGATGCGCTGATCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61845165|ref|XP_581513.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61845165|ref|XP_581513.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               211-490, + strand, RNAz p=0.8604

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-490, + strand, RNAz p=0.8604

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               52-500, gnl|bosTau2|chr19 (3871282-3871730)
               

               
               52-500, gnl|canFam2|chr9 (35785240-35786142)
               

               
               52-500, gnl|dasNov1|scaffold_62725 (2881-3708)
               

               
               52-500, gnl|echTel1|scaffold_307545 (7592-6774)
               

               
               52-500, gnl|hg17|chr17 (53177106-53177951)
               

               
               52-500, gnl|Hg17|chr17 (53177655-53177208)
               

               
               52-500, gnl|loxAfr1|scaffold_10334 (51769-50941)
               

               
               52-500, gnl|mm7|chr11 (88364533-88363723)
               

               
               52-500, gnl|Mm7|chr11 (88363989-88364425)
               

               
               52-500, gnl|monDom2|scaffold_56 (5739433-5738438)
               

               
               52-500, gnl|oryCun1|scaffold_202803 (18888-19729)
               

               
               52-500, gnl|panTro1|chr19_random (38912248-38913093)
               

               
               52-500, gnl|rheMac2|chr16 (41976391-41977247)
               

               
               52-500, gnl|rn3|chr10 (76623352-76622521)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-500, gnl|bosTau2|chr19 (3871282-3871730)
               

               
               52-500, gnl|canFam2|chr9 (35785240-35786142)
               

               
               52-500, gnl|dasNov1|scaffold_62725 (2881-3708)
               

               
               52-500, gnl|echTel1|scaffold_307545 (7592-6774)
               

               
               52-500, gnl|hg17|chr17 (53177106-53177951)
               

               
               52-500, gnl|Hg17|chr17 (53177655-53177208)
               

               
               52-500, gnl|loxAfr1|scaffold_10334 (51769-50941)
               

               
               52-500, gnl|mm7|chr11 (88364533-88363723)
               

               
               52-500, gnl|Mm7|chr11 (88363989-88364425)
               

               
               52-500, gnl|monDom2|scaffold_56 (5739433-5738438)
               

               
               52-500, gnl|oryCun1|scaffold_202803 (18888-19729)
               

               
               52-500, gnl|panTro1|chr19_random (38912248-38913093)
               

               
               52-500, gnl|rheMac2|chr16 (41976391-41977247)
               

               
               52-500, gnl|rn3|chr10 (76623352-76622521)

	52-500, gnl\|bosTau2\|chr19 (3871282-3871730)
	52-500, gnl\|canFam2\|chr9 (35785240-35786142)
	52-500, gnl\|dasNov1\|scaffold_62725 (2881-3708)
	52-500, gnl\|echTel1\|scaffold_307545 (7592-6774)
	52-500, gnl\|hg17\|chr17 (53177106-53177951)
	52-500, gnl\|Hg17\|chr17 (53177655-53177208)
	52-500, gnl\|loxAfr1\|scaffold_10334 (51769-50941)
	52-500, gnl\|mm7\|chr11 (88364533-88363723)
	52-500, gnl\|Mm7\|chr11 (88363989-88364425)
	52-500, gnl\|monDom2\|scaffold_56 (5739433-5738438)
	52-500, gnl\|oryCun1\|scaffold_202803 (18888-19729)
	52-500, gnl\|panTro1\|chr19_random (38912248-38913093)
	52-500, gnl\|rheMac2\|chr16 (41976391-41977247)
	52-500, gnl\|rn3\|chr10 (76623352-76622521)