Non-Coding RNA Search

Pig2-68F18

Sequence:


               
               GGCCCATGTGAAAGACAGGCTGTCGAGATGAGCGCGAGCCAGGCTGCGAAGAGCAGCCTT
CTGGCTTTAAGCCAACAGGAAGAACTAGAGGATTTGCCAAAAGACTACTCCTTGAGCACC
AGTGAAGATGAGGGAGACAGTGATGGAGAAAGAAAGCATCAAAAGCTTTTGGAAGCTATC
AGTTCCCTTGATGGAAAAAATAGGCAGAAGCTGACTGAGAGATCTGAGGCTAGTCTGAAG
GTGTCATAGTTCAATGTCAGTTCTGAAGGATCAGGAGATAAGCTATTCCTCTCAGATCTG
CTCGAGCCCATAAAAACTTCATCCTCAGTGGCCGCTGTGAAAAAGCAGCTGAATAGAGTC
AAATCAAAGAAGACTGTGGAGTTACCCCTTCACAGAGAGGAGATTGAGCGGATCCACAGG
GAAGTGGCATTCAATAAAACCTCACAAGTCCTCTCCAAATGGGATCCCATCGTTCTGAAG
AACCGGCAAGCAGAGCAGCTGGTTTTTCCCCTGAGCAAGCCGCAGTCGGCCTTCGCTCCC
ATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCATGTGAAAGACAGGCTGTCGAGATGAGCGCGAGCCAGGCTGCGAAGAGCAGCCTT
CTGGCTTTAAGCCAACAGGAAGAACTAGAGGATTTGCCAAAAGACTACTCCTTGAGCACC
AGTGAAGATGAGGGAGACAGTGATGGAGAAAGAAAGCATCAAAAGCTTTTGGAAGCTATC
AGTTCCCTTGATGGAAAAAATAGGCAGAAGCTGACTGAGAGATCTGAGGCTAGTCTGAAG
GTGTCATAGTTCAATGTCAGTTCTGAAGGATCAGGAGATAAGCTATTCCTCTCAGATCTG
CTCGAGCCCATAAAAACTTCATCCTCAGTGGCCGCTGTGAAAAAGCAGCTGAATAGAGTC
AAATCAAAGAAGACTGTGGAGTTACCCCTTCACAGAGAGGAGATTGAGCGGATCCACAGG
GAAGTGGCATTCAATAAAACCTCACAAGTCCTCTCCAAATGGGATCCCATCGTTCTGAAG
AACCGGCAAGCAGAGCAGCTGGTTTTTCCCCTGAGCAAGCCGCAGTCGGCCTTCGCTCCC
ATCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12849273|dbj|BAB28277.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12849273|dbj|BAB28277.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-437, + strand, RNAz p=0.997356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-437, + strand, RNAz p=0.997356

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC089407, +
               

               
               3' of NM_001004127, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC089407, +
               

               
               3' of NM_001004127, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-544, gnl|bosTau2|chr9 (32114170-32113627)
               

               
               1-544, gnl|Hg17|chr13 (51500913-51501452)
               

               
               1-544, gnl|Mm7|chr1 (78881555-78882082)
               


               
               261-411, gnl|bosTau2|chr22 (7317374-7317524)
               

               
               261-411, gnl|Hg17|chrX (128770511-128770661)
               

               
               261-411, gnl|Mm7|chrX (43355139-43355289)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-544, gnl|bosTau2|chr9 (32114170-32113627)
               

               
               1-544, gnl|Hg17|chr13 (51500913-51501452)
               

               
               1-544, gnl|Mm7|chr1 (78881555-78882082)
               


               
               261-411, gnl|bosTau2|chr22 (7317374-7317524)
               

               
               261-411, gnl|Hg17|chrX (128770511-128770661)
               

               
               261-411, gnl|Mm7|chrX (43355139-43355289)

	1-544, gnl\|bosTau2\|chr9 (32114170-32113627)
	1-544, gnl\|Hg17\|chr13 (51500913-51501452)
	1-544, gnl\|Mm7\|chr1 (78881555-78882082)

	261-411, gnl\|bosTau2\|chr22 (7317374-7317524)
	261-411, gnl\|Hg17\|chrX (128770511-128770661)
	261-411, gnl\|Mm7\|chrX (43355139-43355289)