Non-Coding RNA Search

Pig2-68N05

Sequence:


               
               GGAGGCTTACCTGTGGCCAAACCATTGGGCTGGAACGGGTTGGTGGAAGGCAGCTGGGGG
TGAGCAGCAGGTGCCGTGAAGGGGTTGAAGGCTGCTCAGGTGGCGTGGGGTAGAGGCAGG
AGGAAGGATGGTTATTTTTCCTCATTTGGTTAATATTGTGGTAACAGCATCCGTCTCAGC
CCTGCTCCGCCTCTCCCCCCTCCTCCCTGTCCAGAGTCTCCGATTTCCTTCTGGGTGGCT
ACACGAGACTCACCTCCAAAGGCAAGCCCTGTGCTGCTGCCTCCACCAGTGGGGGCTGAC
TGAAGCGTGGGGACCTGGCTGGCTATCCCGAAGACGCTGCCATACAAGGAGAGAAGTCAG
CATGCACGTCATCCAGCACCAAGGGGGTCAGGCTGCTGTGTGTGTCCAGACCCCGGGTTA
AGGGGTCTTCCCTGTGCTGGGTGCTGAGCTGAGCGCTCCTGACCGGCCCCGGCTCTGACT
TGGAGAACCCAAGATACGGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCTTACCTGTGGCCAAACCATTGGGCTGGAACGGGTTGGTGGAAGGCAGCTGGGGG
TGAGCAGCAGGTGCCGTGAAGGGGTTGAAGGCTGCTCAGGTGGCGTGGGGTAGAGGCAGG
AGGAAGGATGGTTATTTTTCCTCATTTGGTTAATATTGTGGTAACAGCATCCGTCTCAGC
CCTGCTCCGCCTCTCCCCCCTCCTCCCTGTCCAGAGTCTCCGATTTCCTTCTGGGTGGCT
ACACGAGACTCACCTCCAAAGGCAAGCCCTGTGCTGCTGCCTCCACCAGTGGGGGCTGAC
TGAAGCGTGGGGACCTGGCTGGCTATCCCGAAGACGCTGCCATACAAGGAGAGAAGTCAG
CATGCACGTCATCCAGCACCAAGGGGGTCAGGCTGCTGTGTGTGTCCAGACCCCGGGTTA
AGGGGTCTTCCCTGTGCTGGGTGCTGAGCTGAGCGCTCCTGACCGGCCCCGGCTCTGACT
TGGAGAACCCAAGATACGGGCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-115, - strand, RNAz p=0.995256
               

               
               265-395, - strand, RNAz p=0.725568

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, - strand, RNAz p=0.995256
               

               
               265-395, - strand, RNAz p=0.725568

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-395, gnl|bosTau2|chr25 (32403151-32403569)
               

               
               1-395, gnl|canFam2|chr6 (12132780-12132213)
               

               
               1-395, gnl|dasNov1|scaffold_13425 (51653-51076)
               

               
               1-395, gnl|echTel1|scaffold_214647 (13839-14348)
               

               
               1-395, gnl|hg17|chr7 (99804514-99805147)
               

               
               1-395, gnl|Hg17|chr7 (99805230-99804814)
               

               
               1-395, gnl|loxAfr1|scaffold_6966 (75380-76017)
               

               
               1-395, gnl|mm7|chr5 (136573743-136573213)
               

               
               1-395, gnl|monDom2|scaffold_66 (2413084-2413762)
               

               
               1-395, gnl|oryCun1|scaffold_200122 (32377-31852)
               

               
               1-395, gnl|panTro1|chr6 (101579414-101580044)
               

               
               1-395, gnl|rn3|chr12 (19712980-19712462)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-395, gnl|bosTau2|chr25 (32403151-32403569)
               

               
               1-395, gnl|canFam2|chr6 (12132780-12132213)
               

               
               1-395, gnl|dasNov1|scaffold_13425 (51653-51076)
               

               
               1-395, gnl|echTel1|scaffold_214647 (13839-14348)
               

               
               1-395, gnl|hg17|chr7 (99804514-99805147)
               

               
               1-395, gnl|Hg17|chr7 (99805230-99804814)
               

               
               1-395, gnl|loxAfr1|scaffold_6966 (75380-76017)
               

               
               1-395, gnl|mm7|chr5 (136573743-136573213)
               

               
               1-395, gnl|monDom2|scaffold_66 (2413084-2413762)
               

               
               1-395, gnl|oryCun1|scaffold_200122 (32377-31852)
               

               
               1-395, gnl|panTro1|chr6 (101579414-101580044)
               

               
               1-395, gnl|rn3|chr12 (19712980-19712462)

	1-115, - strand, RNAz p=0.995256
	265-395, - strand, RNAz p=0.725568

	1-395, gnl\|bosTau2\|chr25 (32403151-32403569)
	1-395, gnl\|canFam2\|chr6 (12132780-12132213)
	1-395, gnl\|dasNov1\|scaffold_13425 (51653-51076)
	1-395, gnl\|echTel1\|scaffold_214647 (13839-14348)
	1-395, gnl\|hg17\|chr7 (99804514-99805147)
	1-395, gnl\|Hg17\|chr7 (99805230-99804814)
	1-395, gnl\|loxAfr1\|scaffold_6966 (75380-76017)
	1-395, gnl\|mm7\|chr5 (136573743-136573213)
	1-395, gnl\|monDom2\|scaffold_66 (2413084-2413762)
	1-395, gnl\|oryCun1\|scaffold_200122 (32377-31852)
	1-395, gnl\|panTro1\|chr6 (101579414-101580044)
	1-395, gnl\|rn3\|chr12 (19712980-19712462)