Non-Coding RNA Search

Pig2-6D07

Sequence:


               
               GCGCACTGCTGAAGTGTGAGTGATCACGAAGTAGGACTTTGACCTCTCCAGTGCCCTCTC
CCCACAGTGTCTGGGGCAGTTCTGTCTGACCTGTGACACCAGGCTGCTCTGTATTTGATA
TGTCTCATTGAGCCAGGGCTCATCCACCTCTGCCTTTTTCTTTTCATGACTGGATTTCTA
TTGTGTCACCTGATTTTAAGAGGCAGGGGATAAAAAGTCAAATGGGACTTCTTGGCATGG
AGATTAAATGTTGTGGGAAAAAAAAAAAAAAGCATATCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCACTGCTGAAGTGTGAGTGATCACGAAGTAGGACTTTGACCTCTCCAGTGCCCTCTC
CCCACAGTGTCTGGGGCAGTTCTGTCTGACCTGTGACACCAGGCTGCTCTGTATTTGATA
TGTCTCATTGAGCCAGGGCTCATCCACCTCTGCCTTTTTCTTTTCATGACTGGATTTCTA
TTGTGTCACCTGATTTTAAGAGGCAGGGGATAAAAAGTCAAATGGGACTTCTTGGCATGG
AGATTAAATGTTGTGGGAAAAAAAAAAAAAAGCATATCATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               118-235, + strand, RNAz p=0.91145

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-235, + strand, RNAz p=0.91145

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-282, gnl|bosTau2|chr3 (65955047-65954767)
               

               
               3-282, gnl|canFam2|chr15 (13699564-13698679)
               

               
               3-282, gnl|dasNov1|scaffold_122943 (7628-6752)
               

               
               3-282, gnl|echTel1|scaffold_311773 (84852-84023)
               

               
               3-282, gnl|galGal2|chr8 (24050642-24051555)
               

               
               3-282, gnl|hg17|chr1 (50618234-50619105)
               

               
               3-282, gnl|Hg17|chr1 (50618863-50618614)
               

               
               3-282, gnl|mm7|chr4 (109339215-109338351)
               

               
               3-282, gnl|Mm7|chr4 (109338569-109338847)
               

               
               3-282, gnl|monDom2|scaffold_70 (3010876-3009899)
               

               
               3-282, gnl|oryCun1|scaffold_166745 (849-4)
               

               
               3-282, gnl|panTro1|chr1 (48822471-48823341)
               

               
               3-282, gnl|rheMac2|chr1 (53268766-53269630)
               

               
               3-282, gnl|rn3|chr5 (131400534-131399664)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-282, gnl|bosTau2|chr3 (65955047-65954767)
               

               
               3-282, gnl|canFam2|chr15 (13699564-13698679)
               

               
               3-282, gnl|dasNov1|scaffold_122943 (7628-6752)
               

               
               3-282, gnl|echTel1|scaffold_311773 (84852-84023)
               

               
               3-282, gnl|galGal2|chr8 (24050642-24051555)
               

               
               3-282, gnl|hg17|chr1 (50618234-50619105)
               

               
               3-282, gnl|Hg17|chr1 (50618863-50618614)
               

               
               3-282, gnl|mm7|chr4 (109339215-109338351)
               

               
               3-282, gnl|Mm7|chr4 (109338569-109338847)
               

               
               3-282, gnl|monDom2|scaffold_70 (3010876-3009899)
               

               
               3-282, gnl|oryCun1|scaffold_166745 (849-4)
               

               
               3-282, gnl|panTro1|chr1 (48822471-48823341)
               

               
               3-282, gnl|rheMac2|chr1 (53268766-53269630)
               

               
               3-282, gnl|rn3|chr5 (131400534-131399664)

	3-282, gnl\|bosTau2\|chr3 (65955047-65954767)
	3-282, gnl\|canFam2\|chr15 (13699564-13698679)
	3-282, gnl\|dasNov1\|scaffold_122943 (7628-6752)
	3-282, gnl\|echTel1\|scaffold_311773 (84852-84023)
	3-282, gnl\|galGal2\|chr8 (24050642-24051555)
	3-282, gnl\|hg17\|chr1 (50618234-50619105)
	3-282, gnl\|Hg17\|chr1 (50618863-50618614)
	3-282, gnl\|mm7\|chr4 (109339215-109338351)
	3-282, gnl\|Mm7\|chr4 (109338569-109338847)
	3-282, gnl\|monDom2\|scaffold_70 (3010876-3009899)
	3-282, gnl\|oryCun1\|scaffold_166745 (849-4)
	3-282, gnl\|panTro1\|chr1 (48822471-48823341)
	3-282, gnl\|rheMac2\|chr1 (53268766-53269630)
	3-282, gnl\|rn3\|chr5 (131400534-131399664)