Non-Coding RNA Search

Pig2-6E20

Sequence:


               
               ACAGGCAAACCTTACTACTATAACAACCAGNATAAGGAGTCCCGCTGGACCCGGCCCAAG
ACCTGGATGACCTGGAGGCTCTAGTCAAACAGGAGGCTGCAGGGAAACAGCCGCAGCAGC
CGCAGAGCCTACAGCCCCAGCCTCCTCAGCCGCAGCCCGACCCCCCGCCTGTGCCTCCTG
GCTCCACCTTGGTGCCCACAGGCCTCCTAGAACCTGAGCCAGGTGGGAGTGAAGATTGCA
ATGTGTCAGAGGCTGGCCAGCCCCTGGAGCAGGGCTTCCTGCAGCAGCCGGAGGAGGGCC
GCAGCAGTTCTGCTGGACAGCATCAGCCACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGCAAACCTTACTACTATAACAACCAGNATAAGGAGTCCCGCTGGACCCGGCCCAAG
ACCTGGATGACCTGGAGGCTCTAGTCAAACAGGAGGCTGCAGGGAAACAGCCGCAGCAGC
CGCAGAGCCTACAGCCCCAGCCTCCTCAGCCGCAGCCCGACCCCCCGCCTGTGCCTCCTG
GCTCCACCTTGGTGCCCACAGGCCTCCTAGAACCTGAGCCAGGTGGGAGTGAAGATTGCA
ATGTGTCAGAGGCTGGCCAGCCCCTGGAGCAGGGCTTCCTGCAGCAGCCGGAGGAGGGCC
GCAGCAGTTCTGCTGGACAGCATCAGCCACCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-307, - strand, RNAz p=0.731449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-307, - strand, RNAz p=0.731449

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               138-270, - strand, RNAmicro p=0.998347

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               138-270, - strand, RNAmicro p=0.998347

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               97-307, gnl|bosTau2|chr5 (21760658-21760452)
               

               
               97-307, gnl|Hg17|chr12 (48313930-48314142)
               

               
               97-307, gnl|Mm7|chr15 (99291635-99291844)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-307, gnl|bosTau2|chr5 (21760658-21760452)
               

               
               97-307, gnl|Hg17|chr12 (48313930-48314142)
               

               
               97-307, gnl|Mm7|chr15 (99291635-99291844)

	97-307, gnl\|bosTau2\|chr5 (21760658-21760452)
	97-307, gnl\|Hg17\|chr12 (48313930-48314142)
	97-307, gnl\|Mm7\|chr15 (99291635-99291844)