Non-Coding RNA Search

Pig2-6H01

Sequence:


               
               TGAAAGTTATTACAACAGAGGGAGACAGTCCCTGAGCCTAAAGAGAAGACCCTTCATGTT
CAACTTCTTGCTCTAAGACGGAATTACCGTACAAGAGCTGACCACTTTGTCCATGCGCAG
GGCAGAGAACCCATAGGCACCAAGAGCAACGTGACTGAGTTCGTGTTGTTCGGCCTTTTC
CAGAGCAGGGAGATGCAGCATGTGTGTTTTGTAGTCTCTCTCGTCCATGTGCTCACTGTC
CTGGGGAACCTTCTGGTCATCATCACCATCAATGCCAGCAAGACTCTGAAGGCCCCCATG
TACTTCTTCCTCAGCCACTTGTCTTTTGCCGACATGTGCTATCCATCCGCTACCACCCCC
AAGATGATCGCGGACACTTTCGTGGAGCGCAAGACCATCTCCTTCAATGGCTGCATGAGC
CAACTCTTCTCTGCACACTTCTTTGGTGGCACTGAGATCTTCCTCCTCACAGCCATGGCC
TATGACCGCTACGTGGCCATCTGCAGGCCCCTGCACTACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAGTTATTACAACAGAGGGAGACAGTCCCTGAGCCTAAAGAGAAGACCCTTCATGTT
CAACTTCTTGCTCTAAGACGGAATTACCGTACAAGAGCTGACCACTTTGTCCATGCGCAG
GGCAGAGAACCCATAGGCACCAAGAGCAACGTGACTGAGTTCGTGTTGTTCGGCCTTTTC
CAGAGCAGGGAGATGCAGCATGTGTGTTTTGTAGTCTCTCTCGTCCATGTGCTCACTGTC
CTGGGGAACCTTCTGGTCATCATCACCATCAATGCCAGCAAGACTCTGAAGGCCCCCATG
TACTTCTTCCTCAGCCACTTGTCTTTTGCCGACATGTGCTATCCATCCGCTACCACCCCC
AAGATGATCGCGGACACTTTCGTGGAGCGCAAGACCATCTCCTTCAATGGCTGCATGAGC
CAACTCTTCTCTGCACACTTCTTTGGTGGCACTGAGATCTTCCTCCTCACAGCCATGGCC
TATGACCGCTACGTGGCCATCTGCAGGCCCCTGCACTACACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-521, - strand, RNAz p=0.993195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-521, - strand, RNAz p=0.993195

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               456-521, BX327855 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|BX327855.2|), blast E-value=0.0000000000001, identity=90.91% 
               

               
               436-521, OR_2o17E09_E12_001130_93.y1 Adult mouse olfactory epithelium 
(gb|CB173512.1|), blast E-value=0.0000000000001, identity=87.21% 
               

               
               436-521, OR_2o21F07_B01_010108_02.y1 Adult mouse olfactory epithelium 
(gb|CB173625.1|), blast E-value=0.0000000000001, identity=87.21% 
               

               
               436-521, OR_2o32D07_010529.y1 Adult mouse olfactory epithelium library Mus 
(gb|CB174037.1|), blast E-value=0.0000000000001, identity=87.21% 
               

               
               466-521, OR_2o32G05_010529.y1 Adult mouse olfactory epithelium library Mus 
(gb|CB174052.1|), blast E-value=0.000000000000008, identity=94.64% 
               

               
               436-521, OR_2o35E01_010615.y1 Adult mouse olfactory epithelium library Mus 
(gb|CB174143.1|), blast E-value=0.0000000000001, identity=87.21%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               456-521, BX327855 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|BX327855.2|), blast E-value=0.0000000000001, identity=90.91% 
               

               
               436-521, OR_2o17E09_E12_001130_93.y1 Adult mouse olfactory epithelium 
(gb|CB173512.1|), blast E-value=0.0000000000001, identity=87.21% 
               

               
               436-521, OR_2o21F07_B01_010108_02.y1 Adult mouse olfactory epithelium 
(gb|CB173625.1|), blast E-value=0.0000000000001, identity=87.21% 
               

               
               436-521, OR_2o32D07_010529.y1 Adult mouse olfactory epithelium library Mus 
(gb|CB174037.1|), blast E-value=0.0000000000001, identity=87.21% 
               

               
               466-521, OR_2o32G05_010529.y1 Adult mouse olfactory epithelium library Mus 
(gb|CB174052.1|), blast E-value=0.000000000000008, identity=94.64% 
               

               
               436-521, OR_2o35E01_010615.y1 Adult mouse olfactory epithelium library Mus 
(gb|CB174143.1|), blast E-value=0.0000000000001, identity=87.21%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               145-521, gnl|bosTau2|chr15 (50087869-50088248)
               

               
               145-521, gnl|Hg17|chr11 (48242001-48242380)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-521, gnl|bosTau2|chr15 (50087869-50088248)
               

               
               145-521, gnl|Hg17|chr11 (48242001-48242380)

	456-521, BX327855 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb\|BX327855.2\|), blast E-value=0.0000000000001, identity=90.91%
	436-521, OR_2o17E09_E12_001130_93.y1 Adult mouse olfactory epithelium (gb\|CB173512.1\|), blast E-value=0.0000000000001, identity=87.21%
	436-521, OR_2o21F07_B01_010108_02.y1 Adult mouse olfactory epithelium (gb\|CB173625.1\|), blast E-value=0.0000000000001, identity=87.21%
	436-521, OR_2o32D07_010529.y1 Adult mouse olfactory epithelium library Mus (gb\|CB174037.1\|), blast E-value=0.0000000000001, identity=87.21%
	466-521, OR_2o32G05_010529.y1 Adult mouse olfactory epithelium library Mus (gb\|CB174052.1\|), blast E-value=0.000000000000008, identity=94.64%
	436-521, OR_2o35E01_010615.y1 Adult mouse olfactory epithelium library Mus (gb\|CB174143.1\|), blast E-value=0.0000000000001, identity=87.21%

	145-521, gnl\|bosTau2\|chr15 (50087869-50088248)
	145-521, gnl\|Hg17\|chr11 (48242001-48242380)